ViewGene
Locus Name:
GeneID:
Location:

GeneID:4789
TrivialName: PA14_70340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70340
PAO1 Ortholog Locus:PA5328
Sequence Length:390
Protein Length:129
Start: 6273062
Stop: 6272673
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08713.1|AE004945_7 (AE004945) probable cytochrome c(mono-heme type) [Pseudomonas aeruginosa PAO1]
Identities = 126/129 (97%), Positives = 128/129 (99%)
Sequence:
ATGTCGTCCACGCTCCGCCCCGGACCGGACAACTCGCGCCTTTGCCGCCCGGGGTTGCTGCTTGCCCTGGGC
CTGATGCTGGTGGCCTGCGGAGAATCCACGGAGCCACCGGCACGGGCCGCCGATTCCCAGCGTGTCCCTGCG
GACCCTGCGTTGGCGCAGGTGTATTCCGCCAGTTGCAAGCTCTGTCACGCCAATCCCGCCTCCGGCGCGCCG
CTGACCGGCGATGCCGCTGCCTGGGCGCCACGCCTGGCGCAGGGCATCGACACCCTGCTGGACCACAGCATC
AACGGCTACAAGGGCATGCCGCCCATGGGCATGTGCATGCAGTGCTCGGAAGAGCAGTTCCGGGCTTTGATC
GATTTCATGTCCGCAGCGCAGGACCGATAG
Translation:
MSSTLRPGPDNSRLCRPGLLLALGLMLVACGESTEPPARAADSQRVPADPALAQVYSASCKLCHANPASGAP
LTGDAAAWAPRLAQGIDTLLDHSINGYKGMPPMGMCMQCSEEQFRALIDFMSAAQDR*
AnnotationID:4794GeneID:4789
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 14:02:09
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c5
Cell Localization:()
Synonyms:PA5328
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3245
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF93344.1| (AE004107) cytochrome c5 [Vibrio cholerae]
          Length = 135

 Score = 85.1 bits (209), Expect = 6e-17
 Identities = 37/73 (50%), Positives = 48/73 (65%)

>gb|AAO13003.1| (AY171618) probable cytochrome C [Pseudomonas fluorescens]
          Length = 96

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 35/70 (50%), Positives = 46/70 (65%)








 
Structural Features:
COG3245, CycB, Cytochrome c5 [Energy production and conversion]
CD-Length = 126 residues, 100.0% aligned
Score =  127 bits (321), Expect = 3e-31
Identities = 65/126 (51%), Positives = 78/126 (61%), Gaps = 10/126 (7%)








   
Genomic Context:






   
Comment:


















    ReferenceID:9578




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26719




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34776




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4789_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4789
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7166
                           PA5328_tr
                           translation of PA5328
                           129
                           97.67
                           99.22
                           0
                           664.0
     

     
     
187846
                           gb|AAG08713.1|AE004945_7
                           (AE004945) probable cytochrome c(mono-heme type) [Pseudomonas aeruginosa PAO1]
                           129
                           97.67
                           99.22
                           0
                           664.0
     

     






      

          
GC ORFID: 47791How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5328Glimmer Score: 

          
Start: 5536751Stop: 5536362

          
Length: 390


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5328 translation of PA5328Homolog Bit Score 260.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCGTCCACGCTCCGCCCCGGACCGGACAACTCGCGCCTTTGCCGCCCGGGGTTGCTGCTTGCCCTGGGC 
CTGATGCTGGTGGCCTGCGGAGAATCCACGGAGCCACCGGCACGGGCCGCCGATTCCCAGCGTGTCCCTGCG 
GACCCTGCGTTGGCGCAGGTGTATTCCGCCAGTTGCAAGCTCTGTCACGCCAATCCCGCCTCCGGCGCGCCG 
CTGACCGGCGATGCCGCTGCCTGGGCGCCACGCCTGGCGCAGGGCATCGACACCCTGCTGGACCACAGCATC 
AACGGCTACAAGGGCATGCCGCCCATGGGCATGTGCATGCAGTGCTCGGAAGAGCAGTTCCGGGCTTTGATC 
GATTTCATGTCCGCAGCGCAGGACCGATAG