ViewGene
Locus Name:
GeneID:
Location:

GeneID:4788
TrivialName: PA14_66880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66880
PAO1 Ortholog Locus:PA5061
Sequence Length:417
Protein Length:138
Start: 5973498
Stop: 5973082
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08446.1|AE004919_7 (AE004919) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 138/138 (100%), Positives = 138/138 (100%)
Sequence:
ATGGCCAAGATTGCCCTGAAGAAAAAGACCGTTTCCGAATCCACTTCCCTGGTCTCCGAGATCCGCCACTAT
GCCCGCCAGATCTGGCTTGCCGGCCTGGGTGCGTATTCCCGCCTGGGCACCGAAGGCAGCGACTACTTCAAG
GAATTGGTGAAAGCTGGCGAAGCCCTGGAGAAAAAAGGCAAATCGCTGGTCACAAGTCAGGTCGATTCGGCC
AATGACAGTGTCAAGACCGGCCTCTCTTCGGTGAAGGGAAAAGTCGAAGACCAGCTCGACAGGATCGAGCAG
GCATTCGACAGCCGTGTCGCTAGCACGTTGAACCGGATAGGCATACCTTCCCGGAACGATGTCGAAGCACTC
TCTGCTAAGCTGGATGAGCTGAGCGCAGTGCTCGAGCGTGTCGCGAGAACCCAATAA
Translation:
MAKIALKKKTVSESTSLVSEIRHYARQIWLAGLGAYSRLGTEGSDYFKELVKAGEALEKKGKSLVTSQVDSA
NDSVKTGLSSVKGKVEDQLDRIEQAFDSRVASTLNRIGIPSRNDVEALSAKLDELSAVLERVARTQ*
AnnotationID:4793GeneID:4788
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:23
Gene Name:
Confidence Code:3
GeneProduct:putative poly(hydroxyalcanoate) granule associated protein
Cell Localization:()
Synonyms:PA5061, phaI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05597
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB78724.1| (AB049413) phaI [Pseudomonas chlororaphis]
          Length = 140

 Score =  177 bits (449), Expect = 9e-45
 Identities = 91/139 (65%), Positives = 121/139 (87%), Gaps = 4/139 (2%)

>dbj|BAB91366.1| (AB073926) protein associated to the polyhydroxyalkanoate inclusion
           [Pseudomonas sp. 61-3]
          Length = 140

 Score =  169 bits (429), Expect = 2e-42
 Identities = 87/139 (62%), Positives = 119/139 (85%), Gaps = 4/139 (2%)

>gb|AAN70574.1|AE016700_2 (AE016792) polyhydroxyalkanoate granule-associated protein GA1
           [Pseudomonas putida KT2440]
          Length = 139

 Score =  156 bits (395), Expect = 2e-38
 Identities = 80/138 (57%), Positives = 107/138 (77%), Gaps = 5/138 (3%)






 
Structural Features:
pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin).
CD-Length = 132 residues, 100.0% aligned
Score =  161 bits (408), Expect = 4e-41
Identities = 78/132 (59%), Positives = 96/132 (72%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9576




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26717




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35001




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4788_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4788
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7164
                           PA5061_tr
                           translation of PA5061
                           138
                           99.99
                           99.99
                           0
                           665.0
     

     
     
187835
                           gb|AAG08446.1|AE004919_7
                           (AE004919) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           138
                           99.99
                           99.99
                           0
                           665.0
     

     
     
187836
                           dbj|BAB78724.1|
                           (AB049413) phaI [Pseudomonas chlororaphis]
                           141
                           64.53
                           85.81
                           4
                           453.0
     

     
     
187837
                           dbj|BAB91366.1|
                           (AB073926) protein associated to the polyhydroxyalkanoate inclusion [Pseudomonas sp. 61-3]
                           141
                           61.70
                           84.39
                           4
                           433.0
     

     
     
187838
                           gb|AAN70574.1|AE016700_2
                           (AE016792) polyhydroxyalkanoate granule-associated protein GA1 [Pseudomonas putida KT2440]
                           141
                           56.73
                           75.88
                           5
                           398.0
     

     






      

          
GC ORFID: 47790How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5061Glimmer Score: 

          
Start: 5237182Stop: 5236766

          
Length: 417


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5061 translation of PA5061Homolog Bit Score 260.0

          
Other Homologs:  t_PA5061 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGATTGCCCTGAAGAAAAAGACCGTTTCCGAATCCACTTCCCTGGTCTCCGAGATCCGCCACTAT 
GCCCGCCAGATCTGGCTTGCCGGCCTGGGTGCGTATTCCCGCCTGGGCACCGAAGGCAGCGACTACTTCAAG 
GAATTGGTGAAAGCTGGCGAAGCCCTGGAGAAAAAAGGCAAATCGCTGGTCACAAGTCAGGTCGATTCGGCC 
AATGACAGTGTCAAGACCGGCCTCTCTTCGGTGAAGGGAAAAGTCGAAGACCAGCTCGACAGGATCGAGCAG 
GCATTCGACAGCCGTGTCGCTAGCACGTTGAACCGGATAGGCATACCTTCCCGGAACGATGTCGAAGCACTC 
TCTGCTAAGCTGGATGAGCTGAGCGCAGTGCTCGAGCGTGTCGCGAGAACCCAATAA