ViewGene

Locus Name:
GeneID:
Location:

GeneID:4786
TrivialName: PA14_56750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56750
PAO1 Ortholog Locus:PA4364
Sequence Length:402
Protein Length:133
Start: 5055897
Stop: 5056298
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07752.1|AE004852_5 (AE004852) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 131/133 (98%), Positives = 131/133 (98%)
Sequence:
ATGGCTGGCGAAACCTCGCTGCGCACCCTGCTGCGCACGCTCACTCCCGAACTCAATCCCGGCGACTATGTG
TTCTGTACCTGCGCCGATGGCGCGCTGCCGAACGGCGCCGAGCCGCTCGCCAGCTTCCGCGAGCGCGAGGGC
CTGACCCTGGTGCTCGAACGCCGGCAGGCCGAACGCCTGGGCCTGCCCTACGAATACGTGGCGGCCTGGATC
ACCCTGACGGTGCACTCCTCGCTGGCGGCGGTGGGCCTGACCGCCGCCTTCGCCACGGCGCTAGCCGAAGCC
GGGATCAGTTGCAACGTGATGGCCGGCTATTTCCACGACCACCTGTTCGTCGCCCGCGACGAGGGCCGGCGC
GCCCTCGCCGTGCTCCAGCGGCTGGCGGCGGAGGCACACTGA
Translation:
MAGETSLRTLLRTLTPELNPGDYVFCTCADGALPNGAEPLASFREREGLTLVLERRQAERLGLPYEYVAAWI
TLTVHSSLAAVGLTAAFATALAEAGISCNVMAGYFHDHLFVARDEGRRALAVLQRLAAEAH*
AnnotationID:4791GeneID:4786
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 06:06:46
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4364
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9572
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17115
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4786_cdd.html
URL:
ReferenceID:26713
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4786

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7162 PA4364_tr translation of PA4364 133 98.49 98.49 0 665.0
187760 gb|AAG07752.1|AE004852_5 (AE004852) hypothetical protein PA4364 [Pseudomonas aeruginosa PAO1] 133 98.49 98.49 0 665.0
187761 gb|AAF93966.1| (AE004165) hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961] 135 55.55 71.85 5 349.0
187762 gb|AAO07836.1|AE016811_77 (AE016811) Uncharacterized protein conserved in bacteria [Vibrio vulnificus CMCP6] 135 54.07 70.37 6 342.0
187763 dbj|BAC97433.1| (AP005350) uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] 135 53.33 70.37 6 338.0
GC ORFID: 47788How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4364Glimmer Score:
Start: 4319573Stop: 4319974
Length: 402
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4364 translation of PA4364Homolog Bit Score 260.0
Other Homologs: t_PA4364 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTGGCGAAACCTCGCTGCGCACCCTGCTGCGCACGCTCACTCCCGAACTCAATCCCGGCGACTATGTG
TTCTGTACCTGCGCCGATGGCGCGCTGCCGAACGGCGCCGAGCCGCTCGCCAGCTTCCGCGAGCGCGAGGGC
CTGACCCTGGTGCTCGAACGCCGGCAGGCCGAACGCCTGGGCCTGCCCTACGAATACGTGGCGGCCTGGATC
ACCCTGACGGTGCACTCCTCGCTGGCGGCGGTGGGCCTGACCGCCGCCTTCGCCACGGCGCTAGCCGAAGCC
GGGATCAGTTGCAACGTGATGGCCGGCTATTTCCACGACCACCTGTTCGTCGCCCGCGACGAGGGCCGGCGC
GCCCTCGCCGTGCTCCAGCGGCTGGCGGCGGAGGCACACTGA