ViewGene
Locus Name:
GeneID:
Location:

GeneID:4785
TrivialName: PA14_16640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16640
PAO1 Ortholog Locus:PA3691
Sequence Length:405
Protein Length:134
Start: 1423851
Stop: 1423447
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07079.1|AE004788_9 (AE004788) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/134 (99%), Positives = 134/134 (100%)
Sequence:
ATGGAGCAAAAAGCGATGAGCAAGCAACACACCGGTTCCCTGCGTGGCCTCAAGCTGGCCCTGCTGGCCGTA
GGCAGCAGCCTGGTCCTGGCCGGCTGCGCCGGCAACCCGCCGACCGAGCAGTTCGCCGTGACCGAGTCCGCG
GTGAATAACGCGGTAAGCGCCGGCGGCCCGGAATATGCCCCGGTCGAGATGAAGTCCGCCCAGGACAAGCTG
AGCCAGGCGCGCATCGCCATGAACGACAAGGAATACGACCAGGCCAAGCGCCTGGCGCAGCAGGCCGAGTGG
GACGCCCGGGTCGCCGAGCGCAAGACCCAGGCCGCCAAGGCGCAGAAAGCCGTGAAGGATGCCCAGCAGGGC
GTCATGGAACTGCGTGAGGAAGGCATGCGCGATACGCAGCACTAA
Translation:
MEQKAMSKQHTGSLRGLKLALLAVGSSLVLAGCAGNPPTEQFAVTESAVNNAVSAGGPEYAPVEMKSAQDKL
SQARIAMNDKEYDQAKRLAQQAEWDARVAERKTQAAKAQKAVKDAQQGVMELREEGMRDTQH*
AnnotationID:4790GeneID:4785
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:03
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA3691
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55704.1| (AE016863) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 117

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

>gb|AAN69780.1|AE016614_6 (AE016789) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 117

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 6/112 (5%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9570




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26711




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4785
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7161
                           PA3691_tr
                           translation of PA3691
                           134
                           99.25
                           99.99
                           0
                           664.0
     

     
     
187757
                           gb|AAG07079.1|AE004788_9
                           (AE004788) hypothetical protein PA3691 [Pseudomonas aeruginosa PAO1]
                           134
                           99.25
                           99.99
                           0
                           664.0
     

     
     
187759
                           gb|AAO55027.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           138
                           65.94
                           81.15
                           5
                           450.0
     

     
     
187758
                           gb|AAN67124.1|AE016341_7
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           158
                           62.65
                           72.15
                           26
                           480.0
     

     






      

          
GC ORFID: 47787How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3691Glimmer Score: 

          
Start: 3530086Stop: 3530490

          
Length: 405


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3691 translation of PA3691Homolog Bit Score 260.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4817 (ORF: BLASTX 179.0), t_PA3691 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCAAAAAGCGATGAGCAAGCAACACACCGGTTCCCTGCGTGGCCTCAAGCTGGCCCTGCTGGCCGTA 
GGCAGCAGCCTGGTCCTGGCCGGCTGCGCCGGCAACCCGCCGACCGAGCAGTTCGCCGTGACCGAGTCCGCG 
GTGAATAACGCGGTAAGCGCCGGCGGCCCGGAATATGCCCCGGTCGAGATGAAGTCCGCCCAGGACAAGCTG 
AGCCAGGCGCGCATCGCCATGAACGACAAGGAATACGACCAGGCCAAGCGCCTGGCGCAGCAGGCCGAGTGG 
GACGCCCGGGTCGCCGAGCGCAAGACCCAGGCCGCCAAGGCGCAGAAAGCCGTGAAGGATGCCCAGCAGGGC 
GTCATGGAACTGCGTGAGGAAGGCATGCGCGATACGCAGCACTAA