ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4784

TrivialName: PA14_31290

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_31290

PAO1 Ortholog Locus: PA2570

Sequence Length: 369

Protein Length: 122

Start: 2721861

Stop: 2722229

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05958.1|AE004685_4 (AE004685) PA-I galactophilic lectin [Pseudomonas aeruginosa PAO1] Identities = 122/122 (100%), Positives = 122/122 (100%)

Sequence:

ATGGCTTGGAAAGGTGAGGTTCTGGCTAATAACGAAGCAGGGCAGGTAACGTCGATTATCTACAATCCGGGC
GATGTCATTACCATCGTCGCCGCCGGTTGGGCCAGTTACGGACCTACCCAGAAATGGGGGCCGCAGGGCGAT
CGGGAGCATCCGGACCAAGGGCTGATCTGCCACGATGCGTTTTGTGGCGCGCTGGTCATGAAGATTGGCAAC
AGCGGAACCATTCCGGTCAATACCGGGTTGTTCCGTTGGGTTGCACCCAATAATGTCCAGGGCGCAATCACT
CTTATCTACAACGACGTGCCCGGAACCTATGGCAATAACTCCGGCTCGTTCAGCGTCAATATTGGAAAGGAT
CAGTCCTGA

Translation:

MAWKGEVLANNEAGQVTSIIYNPGDVITIVAAGWASYGPTQKWGPQGDREHPDQGLICHDAFCGALVMKIGN
SGTIPVNTGLFRWVAPNNVQGAITLIYNDVPGTYGNNSGSFSVNIGKDQS*

AnnotationID:4789 GeneID:4784

AnnotatorUID: diggins

Modification Date/Time: 2005-03-07 07:07:55

Gene Name: pa1L

Confidence Code: 1

GeneProduct: PA-I galactophilic lectin

Cell Localization: ()

Synonyms: lecA

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (16) Motility & Attachment

Alternate Gene Product Name: galactophilic lectin

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): adaptation, protection

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:9568

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:26709

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34531

Author/Investigator(s): Winzer K, Falconer C, Garber NC, Diggle SP, Camara M, Williams P.

Title: The Pseudomonas aeruginosa lectins PA-IL and PA-IIL are controlled by quorum sensing and by RpoS.

PubMed: 11053384

MedLine:

Source:

J Bacteriol. 2000 Nov;182(22):6401-11.

Reference Type: Journal

Data:

URL:	`http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11053384`

Homologs By Global Alignment

Gene ID:4784

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

7160 PA2570_tr translation of PA2570 122 99.99 99.99 0 665.0

187753 gb|AAG05958.1|AE004685_4 (AE004685) PA-I galactophilic lectin [Pseudomonas aeruginosa PAO1] 122 99.99 99.99 0 665.0

187754 emb|CAA46728.1| (X65933) PA-I galactophilic lectin [Pseudomonas aeruginosa] 122 99.99 99.99 0 665.0

187755 gb|AAF70459.1|AF229814_2 (AF229814) galactophilic lectin; PA-I lectin; PA-1L [Pseudomonas aeruginosa] 122 99.99 99.99 0 665.0

187756 gb|AAD19708.1| (AF123694) galactophilic lectin PA-I [Pseudomonas aeruginosa] 122 99.18 99.99 0 663.0

GC ORFID: `47786`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2570`	Glimmer Score:
Start: `2232065`	Stop: `2231697`
Length: `369`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2570 translation of PA2570`	Homolog Bit Score `260.0`
Other Homologs: `t_PA2570 (ORF: GLIMMER)`
GC ORF Sequence
`ATGGCTTGGAAAGGTGAGGTTCTGGCTAATAACGAAGCAGGGCAGGTAACGTCGATTATCTACAATCCGGGC GATGTCATTACCATCGTCGCCGCCGGTTGGGCCAGTTACGGACCTACCCAGAAATGGGGGCCGCAGGGCGAT CGGGAGCATCCGGACCAAGGGCTGATCTGCCACGATGCGTTTTGTGGCGCGCTGGTCATGAAGATTGGCAAC AGCGGAACCATTCCGGTCAATACCGGGTTGTTCCGTTGGGTTGCACCCAATAATGTCCAGGGCGCAATCACT CTTATCTACAACGACGTGCCCGGAACCTATGGCAATAACTCCGGCTCGTTCAGCGTCAATATTGGAAAGGAT CAGTCCTGA`