ViewGene
Locus Name:
GeneID:
Location:

GeneID:4783
TrivialName: PA14_51890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51890
PAO1 Ortholog Locus:PA0957
Sequence Length:408
Protein Length:135
Start: 4608022
Stop: 4607615
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04346.1|AE004529_12 (AE004529) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/135 (99%), Positives = 135/135 (100%)
Sequence:
ATGAACGCGGCGCAGGTACAGGCGTTGATCCGCATGGGGCTGCCCATGGCCGAGGACATCGATTTTCGTGTC
GAGCGTCTCGACGAACGACATGCGCTGGCGCGCATACCTTTTCACGGCAAGCTGGTGCGTCCCGGTGGAACG
TTGTCCGGCCCGACCATCATGGCGCTGGCCGACGCGGCGATGTACGCGGTCATTCTCGGGCGTCTCGGGGCG
GTCGAGATGGCCGTGACCTCGAACCTGAACATCAACTTCCTCAGCAAGCCCAGGCCCGAGGACCTGTTGGCC
GAGGCGAGCATCCTCAGGCTGGGGCGGCGCCAGGTCGTCTGCGAGGTCGGGGTGTTTTCGCAGAGTAATGAG
GAAGACCTAGTGGCCCATGTGACCGGTACCTATGCCCTTCCTTTATAG
Translation:
MNAAQVQALIRMGLPMAEDIDFRVERLDERHALARIPFHGKLVRPGGTLSGPTIMALADAAMYAVILGRLGA
VEMAVTSNLNINFLSKPRPEDLLAEASILRLGRRQVVCEVGVFSQSNEEDLVAHVTGTYALPL*
AnnotationID:4788GeneID:4783
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 15:03:42
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0957
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2050, PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       CD-Length = 141 residues,  94.3% aligned
       Score =  104 bits (261), Expect = 3e-24
pfam03061, 4HBT, Thioesterase superfamily. Score: 49.9, 1e-07






   
Genomic Context:






   
Comment:


















    ReferenceID:9566




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26707




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4783
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7159
                           PA0957_tr
                           translation of PA0957
                           135
                           99.25
                           99.99
                           0
                           668.0
     

     
     
187747
                           gb|AAG04346.1|AE004529_12
                           (AE004529) hypothetical protein PA0957 [Pseudomonas aeruginosa PAO1]
                           135
                           99.25
                           99.99
                           0
                           668.0
     

     
     
187748
                           dbj|BAC50229.1|
                           (AP005953) bll4964 [Bradyrhizobium japonicum USDA 110]
                           143
                           44.75
                           63.63
                           9
                           295.0
     

     
     
187749
                           emb|CAE28208.1|
                           (BX572601) Phenylacetic acid degradation-related protein:Thioesterase superfamily [Rhodopseudomonas palustris CGA009]
                           143
                           43.35
                           62.93
                           9
                           289.0
     

     
     
187750
                           gb|AAL52348.1|
                           (AE009556) Hypothetical Protein [Brucella melitensis 16M]
                           136
                           42.64
                           61.02
                           3
                           267.0
     

     






      

          
GC ORFID: 47785How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0957Glimmer Score: 

          
Start: 345885Stop: 346292

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0957 translation of PA0957Homolog Bit Score 261.0

          
Other Homologs:  t_PA0957 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCGGCGCAGGTACAGGCGTTGATCCGCATGGGGCTGCCCATGGCCGAGGACATCGATTTTCGTGTC 
GAGCGTCTCGACGAACGACATGCGCTGGCGCGCATACCTTTTCACGGCAAGCTGGTGCGTCCCGGTGGAACG 
TTGTCCGGCCCGACCATCATGGCGCTGGCCGACGCGGCGATGTACGCGGTCATTCTCGGGCGTCTCGGGGCG 
GTCGAGATGGCCGTGACCTCGAACCTGAACATCAACTTCCTCAGCAAGCCCAGGCCCGAGGACCTGTTGGCC 
GAGGCGAGCATCCTCAGGCTGGGGCGGCGCCAGGTCGTCTGCGAGGTCGGGGTGTTTTCGCAGAGTAATGAG 
GAAGACCTAGTGGCCCATGTGACCGGTACCTATGCCCTTCCTTTATAG