ViewGene
Locus Name:
GeneID:
Location:

GeneID:4782
TrivialName: PA14_02130
AnnotatorUID: danlee
Modification Date/Time:2006-06-02 23:11:48
LocusName:PA14_02130
PAO1 Ortholog Locus:PA0170
Sequence Length:381
Protein Length:126
Start: 193039
Stop: 192659
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03560.1|AE004455_1 (AE004455) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/126 (100%), Positives = 126/126 (100%)
Sequence:
ATGAGTGACCTGCACATACCCGGCACCCAGTCCACGCCCGCCATCCAGGGCGACTGGCAGGCCGGACGCCTG
TCCATGCAAGGCGATTCCTACCCGGAAAACTCCTATGAACTGTTCGGCCAGGTGATCGACTGGGTCGAGCGC
TTCCTCGCCGACGGGCAGCGGCCGCTGGAACTGGACCTGCGCCTGCTGTACCTGAACACCAGTTCGATCAAG
GCCATGATGGACATCCTCGACCTGCTCGAAGAGGCCCACCAGGGCGGTCGCCCGGTCAGCCTGCGCTGGCAC
TACGACCGGCGCAACGAACGGGTCGCCGAGCTGGCCGAGGAGTTCCGCGAGGATTGCAGCTTCCCCTTCGCC
ATCCAGGCCCACGACGAGTAG
Translation:
MSDLHIPGTQSTPAIQGDWQAGRLSMQGDSYPENSYELFGQVIDWVERFLADGQRPLELDLRLLYLNTSSIK
AMMDILDLLEEAHQGGRPVSLRWHYDRRNERVAELAEEFREDCSFPFAIQAHDE*
AnnotationID:4787GeneID:4782
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0170
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9564




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26705




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4782
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7158
                           PA0170_tr
                           translation of PA0170
                           126
                           99.99
                           99.99
                           0
                           668.0
     

     
     
187745
                           gb|AAG03560.1|AE004455_1
                           (AE004455) hypothetical protein PA0170 [Pseudomonas aeruginosa PAO1]
                           126
                           99.99
                           99.99
                           0
                           668.0
     

     
     
187746
                           gb|AAR34927.1|
                           (AE017212) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           129
                           44.18
                           63.56
                           6
                           265.0
     

     






      

          
GC ORFID: 47784How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0170Glimmer Score: 

          
Start: 5994378Stop: 5993998

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0170 translation of PA0170Homolog Bit Score 261.0

          
Other Homologs:  t_PA0170 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGACCTGCACATACCCGGCACCCAGTCCACGCCCGCCATCCAGGGCGACTGGCAGGCCGGACGCCTG 
TCCATGCAAGGCGATTCCTACCCGGAAAACTCCTATGAACTGTTCGGCCAGGTGATCGACTGGGTCGAGCGC 
TTCCTCGCCGACGGGCAGCGGCCGCTGGAACTGGACCTGCGCCTGCTGTACCTGAACACCAGTTCGATCAAG 
GCCATGATGGACATCCTCGACCTGCTCGAAGAGGCCCACCAGGGCGGTCGCCCGGTCAGCCTGCGCTGGCAC 
TACGACCGGCGCAACGAACGGGTCGCCGAGCTGGCCGAGGAGTTCCGCGAGGATTGCAGCTTCCCCTTCGCC 
ATCCAGGCCCACGACGAGTAG