ViewGene
Locus Name:
GeneID:
Location:

GeneID:4781
TrivialName: PA14_68460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68460
PAO1 Ortholog Locus:PA5183
Sequence Length:408
Protein Length:135
Start: 6108208
Stop: 6108615
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08568.1|AE004931_5 (AE004931) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 132/135 (97%), Positives = 132/135 (97%)
Sequence:
ATGCGTAAATCTCTCCTGGTAATCGCGTTCGGCCTGCTGGGCGCACAAGCCGCGTTCGCCGGCGACTCCACC
AAGACCGCCGTGGGCGGCGGCGTGGGCGGCGCCCTGGGCAACGTCGTGGGCAACGCCATCGGCGGTAGCACC
GGTGCGGCCATAGGTGCCGGCCTAGGTGGCGCGGCCGGCGGCGCGATGACCGCCAAGGACGGGCGCAAGACC
GAAGCAGCCCTGGGTGGCGGGCTAGGCGCGGCCGGCGGTTCGGTGATCGGCAACAAGCTGGGCGGCAGCACC
GGCGCGACCATAGGTGCAGGCCTCGGCGGCGCAGCGGGTGGCGCGGTCGGTAACAACCTGGGCAAGGACAAC
GACAGCGGTCACCGCGGCAAGAAACACCGCAAGCACAAGCATCGTTGA
Translation:
MRKSLLVIAFGLLGAQAAFAGDSTKTAVGGGVGGALGNVVGNAIGGSTGAAIGAGLGGAAGGAMTAKDGRKT
EAALGGGLGAAGGSVIGNKLGGSTGATIGAGLGGAAGGAVGNNLGKDNDSGHRGKKHRKHKHR*
AnnotationID:4786GeneID:4781
AnnotatorUID: diggins
Modification Date/Time: 2005-05-31 20:08:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5183
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16859.1| (AL646073) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 143

 Score =  111 bits (278), Expect = 6e-25
 Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 6/135 (4%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9562




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26703




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34866




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4781_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4781
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7156
                           PA5183_tr
                           translation of PA5183
                           135
                           97.77
                           97.77
                           0
                           668.0
     

     
     
187739
                           gb|AAG08568.1|AE004931_5
                           (AE004931) hypothetical protein PA5183 [Pseudomonas aeruginosa PAO1]
                           135
                           97.77
                           97.77
                           0
                           668.0
     

     
     
187740
                           gb|AAN69524.1|AE016586_3
                           (AE016788) hypothetical protein PP3930 [Pseudomonas putida KT2440]
                           135
                           63.70
                           79.25
                           5
                           438.0
     

     
     
187741
                           gb|AAN65886.1|AE016216_7
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           161
                           49.68
                           64.59
                           27
                           381.0
     

     
     
187742
                           gb|AAO58830.1|
                           (AE016875) hypothetical protein PSPTO5408 [Pseudomonas syringae pv. tomato str. DC3000]
                           171
                           40.93
                           59.06
                           39
                           336.0
     

     






      

          
GC ORFID: 47783How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5183Glimmer Score: 

          
Start: 5371894Stop: 5372301

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5183 translation of PA5183Homolog Bit Score 261.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2296 (ORF: BLASTX 136.0), t_PA5183 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAAATCTCTCCTGGTAATCGCGTTCGGCCTGCTGGGCGCACAAGCCGCGTTCGCCGGCGACTCCACC 
AAGACCGCCGTGGGCGGCGGCGTGGGCGGCGCCCTGGGCAACGTCGTGGGCAACGCCATCGGCGGTAGCACC 
GGTGCGGCCATAGGTGCCGGCCTAGGTGGCGCGGCCGGCGGCGCGATGACCGCCAAGGACGGGCGCAAGACC 
GAAGCAGCCCTGGGTGGCGGGCTAGGCGCGGCCGGCGGTTCGGTGATCGGCAACAAGCTGGGCGGCAGCACC 
GGCGCGACCATAGGTGCAGGCCTCGGCGGCGCAGCGGGTGGCGCGGTCGGTAACAACCTGGGCAAGGACAAC 
GACAGCGGTCACCGCGGCAAGAAACACCGCAAGCACAAGCATCGTTGA