ViewGene
Locus Name:
GeneID:
Location:

GeneID:4780
TrivialName: PA14_43020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43020
PAO1 Ortholog Locus:PA1659
Sequence Length:408
Protein Length:135
Start: 3827574
Stop: 3827167
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05048.1|AE004593_10 (AE004593) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/135 (99%), Positives = 135/135 (100%)
Sequence:
ATGACCGGATACGGCAGCCTGTTCGAGCGCCTGAACGGCGACGCGGATAAGCGCGTCGGCTGGAGCCGCGAG
GTTTCCGCCATGGCGTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGGGCGGGCAGCGTGCAGACG
CTGTCCGACTACGGGTTGCCCGATCTCAACGACATGCGCCTGAGCCTGCACGACTCCCTGAGCCAGGCCCGC
TCGGCCATCGAAGGTTTCATCGAGGCTTACGAACCGCGCTTGAGCAACGTGCGTGTCGTTTCCCTGCCGCGC
GACAACGACCAGCTCCGCCTGGCCTTCAGCATCGAAGGGTTGCTGGAGGTGGAAGGTTTCAAGCGCCAGGTG
AGTTTTTCCGCATGCCTGGATGGCAGCGGCCAGGTGAAGGTCAGCTAA
Translation:
MTGYGSLFERLNGDADKRVGWSREVSAMASVAAHLGKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDSLSQAR
SAIEGFIEAYEPRLSNVRVVSLPRDNDQLRLAFSIEGLLEVEGFKRQVSFSACLDGSGQVKVS*
AnnotationID:4785GeneID:4780
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1659
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9560




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26701




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37187




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4780_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4780
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7155
                           PA1659_tr
                           translation of PA1659
                           135
                           99.25
                           99.99
                           0
                           668.0
     

     
     
187736
                           gb|AAG05048.1|AE004593_10
                           (AE004593) hypothetical protein PA1659 [Pseudomonas aeruginosa PAO1]
                           135
                           99.25
                           99.99
                           0
                           668.0
     

     
     
187737
                           gb|AAO58853.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           135
                           90.37
                           95.55
                           0
                           609.0
     

     
     
187738
                           gb|AAO56050.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           135
                           47.40
                           60.74
                           0
                           283.0
     

     






      

          
GC ORFID: 47782How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1659Glimmer Score: 

          
Start: 1126335Stop: 1126742

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1659 translation of PA1659Homolog Bit Score 261.0

          
Other Homologs:  t_PA1659 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGGATACGGCAGCCTGTTCGAGCGCCTGAACGGCGACGCGGATAAGCGCGTCGGCTGGAGCCGCGAG 
GTTTCCGCCATGGCGTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGGGCGGGCAGCGTGCAGACG 
CTGTCCGACTACGGGTTGCCCGATCTCAACGACATGCGCCTGAGCCTGCACGACTCCCTGAGCCAGGCCCGC 
TCGGCCATCGAAGGTTTCATCGAGGCTTACGAACCGCGCTTGAGCAACGTGCGTGTCGTTTCCCTGCCGCGC 
GACAACGACCAGCTCCGCCTGGCCTTCAGCATCGAAGGGTTGCTGGAGGTGGAAGGTTTCAAGCGCCAGGTG 
AGTTTTTCCGCATGCCTGGATGGCAGCGGCCAGGTGAAGGTCAGCTAA