ViewGene
Locus Name:
GeneID:
Location:

GeneID:478
TrivialName: PA14_55960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55960
PAO1 Ortholog Locus:PA4307
Sequence Length:1899
Protein Length:632
Start: 4994810
Stop: 4996708
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07695.1|AE004847_2 (AE004847) chemotactic transducer PctC [Pseudomonas aeruginosa PAO1]
Identities = 626/632 (99%), Positives = 628/632 (99%)
Sequence:
ATGCTTCGCTCGCTGTCGTTTGCCAAGAAAATCCTTCTCGCCGCCGCATTGGTGGTGGTTTTCGCCTTCACC
TGCTTCATCCTCTACAACGATTACCGACAGCGCGAGGCCGTGCGCACGGACACGGAAAACTACCTCGGGGAA
ATCGGCACCCTGACCGCCAGCAACATCCAGAGCTGGCTGGAAGGCCGCATGCATCTGGTGGAAGGCCTGGCC
TCGCAACTGGCGCTGCTCGACCAGCCCGACGAGGCGAATATCGCAAGGCAACTGGAACAGCCCGTCTTCAGC
CGCAATTTCGCGTCGGTCTATCTTGGCGAGGCGGCCAGCGGCGCCTTCACCATGCGCCCCTACGACGCCATG
CCGGAAGGTTACGACCCACGTACCCGCGCCTGGTACAAGGACGCGCTGGCGGCCGACCGGCTGATCGTCACC
GAACCCTTCGTCGATGCCGGCACCGGCGAGCAGATCCTCGCCATGTCGCTGCCGGTGCGGCACGCCGGTCAA
CTGCTGGGCGTCGCCGCCGGCGACATGAAGCTGGAGACCCTGACCGCGATCCTCAATTCCCTGAAGTTCGAT
GGTGCCGGCTACGCCTTCCTGGTCAGCGACGCCGGCAAGATCCTCCTCCACCCCGACTCCGGGCTGGTCCTG
AAGACCCTCGCCGAAGCCTATCCCAAGGGCGCACCGAACATCGACCCCGGGGTCCACGAGGTGGAACTCGAC
GGCCGCAGCCAGTTCGTTTCCTTCACCCCGGTGAAGGGACTGCCCGGCGTGACCTGGTACGTCGCCCTGGTC
CTCGACCGCGACACCGCCTATTCGATGCTCAGCGAATTCCGCACTTCGGCGATCGTCGCCACGCTGATCGCG
GTGGTCGGCATCATGCTTCTCCTCGGCATGCTGATCCGCGTACTGATGCAGCCGCTCACCGACATGGGCCGC
GCCATGCAGGACATCGCCCAGGGCGAAGGCGACCTGACCAAGCGCCTGCGGGTCACCAGCAACGATGAATTC
GGTACGTTGGCCAATGCCTTCAACCGCTTCGTCGAGCGTATCCACGAATCGATCCGCGAGGTCGCCGGCACC
GCTCGCCAACTGCACGACGTGGCGCAACTGGTGGTGAACGCCTCGAACTCTTCGATGGCCAACTCCGACGAG
CAGTCCAACCGTACCAACAGCGTCGCCGCGGCGATCAACGAACTCGGTGCCGCCGCCCAGGAAATCGCCCGC
AACGCCGCCGATGCCTCGCACCATGCGTCCGACGCCAACCACCAGGCCGAGGACGGCAAGCAGGTGGTCGAG
CAGACCATCCGCGCGATGAACGAGCTTTCCGAGAAGATCAGCGCCTCCTGCGCCAACATCGAGGCCCTGAAC
AGCCGCACGGTGAACATCGGCCAGATCCTCGAGGTGATCAAGGGCATCTCCGAGCAGACCAACCTGCTTGCC
CTCAACGCCGCCATCGAAGCCGCCCGCGCCGGCGAGGCCGGACGCGGCTTCGCGGTGGTCGCCGACGAGGTG
CGCAACCTGGCCCATCGCGCCCAGGAGTCGGCCCAGCAGATCCAGAAGATGATCGAAGAGCTGCAAGTCGGC
GCCCGCGAGGCGGTGGCCACCATGACCGAAAGCCAGCGCTACAGCCTGGAGAGCGTGGAGATCGCCAACCGT
GCCGGCGAACGCCTGGGCAGCGTGACCAGCCGGATCGGCGAGATCGACAGCATGAACCAGTCGGTGGCCACC
GCCACCGAGGAACAGACCGCGGTGGTCGACTCGCTGAACATGGACATCACCGAGATCAACACCCTCAACCAG
GAAGGCGTGGAGAACCTCCAGGCCACCCTGCGCGCCTGCGGCGAGCTGGAAGCCCAGGCCGGGCGCCTGCGG
CACCTGGTGGACAGCTTCAAGATCTGA
Translation:
MLRSLSFAKKILLAAALVVVFAFTCFILYNDYRQREAVRTDTENYLGEIGTLTASNIQSWLEGRMHLVEGLA
SQLALLDQPDEANIARQLEQPVFSRNFASVYLGEAASGAFTMRPYDAMPEGYDPRTRAWYKDALAADRLIVT
EPFVDAGTGEQILAMSLPVRHAGQLLGVAAGDMKLETLTAILNSLKFDGAGYAFLVSDAGKILLHPDSGLVL
KTLAEAYPKGAPNIDPGVHEVELDGRSQFVSFTPVKGLPGVTWYVALVLDRDTAYSMLSEFRTSAIVATLIA
VVGIMLLLGMLIRVLMQPLTDMGRAMQDIAQGEGDLTKRLRVTSNDEFGTLANAFNRFVERIHESIREVAGT
ARQLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAADASHHASDANHQAEDGKQVVE
QTIRAMNELSEKISASCANIEALNSRTVNIGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEV
RNLAHRAQESAQQIQKMIEELQVGAREAVATMTESQRYSLESVEIANRAGERLGSVTSRIGEIDSMNQSVAT
ATEEQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELEAQAGRLRHLVDSFKI*
AnnotationID:487GeneID:478
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 08:08:40
Gene Name:pctC
Confidence Code:1
GeneProduct:chemotactic transducer PctC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66994.1|AE016327_9 (AE016779) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 624

 Score =  759 bits (1959), Expect = 0.0
 Identities = 399/632 (63%), Positives = 492/632 (77%), Gaps = 8/632 (1%)

>gb|AAO55987.1| (AE016864) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 629

 Score =  746 bits (1927), Expect = 0.0
 Identities = 394/631 (62%), Positives = 488/631 (77%), Gaps = 2/631 (0%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  86.8% aligned
Score =  224 bits (571), Expect = 3e-59
Identities = 139/359 (38%), Positives = 218/359 (60%), Gaps = 5/359 (1%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer)
CD-Length = 262 residues,  99.6% aligned
Score =  218 bits (557), Expect = 1e-57
Identities = 110/261 (42%), Positives = 152/261 (58%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) 
signaling domain.
CD-Length = 251 residues,  99.6% aligned
Score =  177 bits (450), Expect = 4e-45
Identities = 95/250 (38%), Positives = 153/250 (61%)







   
Genomic Context:






   
Comment:


















    ReferenceID:959




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18101




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36671




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:478_cdd.html


    		




 
URL:

















    ReferenceID:36798




  
Author/Investigator(s):
        Taguchi K, Fukutomi H, Kuroda A, Kato J, Ohtake H.





  
Title:
        Genetic identification of chemotactic transducers for amino acids in Pseudomonas aeruginosa.




  
PubMed:
        9353923


MedLine:
        




    
Source:
Microbiology. 1997 Oct;143 ( Pt 10):3223-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9353923









           
Homologs By Global Alignment 

           

       



     
Gene ID:478
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
835
                           PA4307_tr
                           translation of PA4307
                           632
                           99.05
                           99.36
                           0
                           3089.0
     

     
     
34472
                           gb|AAG07695.1|AE004847_2
                           (AE004847) chemotactic transducer PctC [Pseudomonas aeruginosa PAO1]
                           632
                           99.05
                           99.36
                           0
                           3089.0
     

     
     
34473
                           dbj|BAA23410.1|
                           (D86947) chemotactic transducer [Pseudomonas aeruginosa]
                           632
                           98.41
                           98.89
                           0
                           3068.0
     

     
     
34475
                           dbj|BAA09307.1|
                           (D50642) transducer [Pseudomonas aeruginosa]
                           632
                           75.94
                           84.01
                           3
                           2352.0
     

     
     
34474
                           gb|AAG07697.1|AE004847_4
                           (AE004847) chemotactic transducer PctA [Pseudomonas aeruginosa PAO1]
                           632
                           75.94
                           84.01
                           3
                           2352.0
     

     






      

          
GC ORFID: 43480How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4307Glimmer Score: 

          
Start: 4258486Stop: 4260384

          
Length: 1899


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4307 translation of PA4307Homolog Bit Score 1194.0

          
Other Homologs:  t_PA4309 (ORF: BLASTX 909.0), t_PA4310 (ORF: BLASTX 894.0), psyr_15may02_Scaffold1_revised_gene1215 (ORF: BLASTX 748.0), psyr_15may02_Scaffold3_revised_gene4268 (ORF: BLASTX 688.0), t_PA2652 (ORF: BLASTX 255.0), t_PA4307 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTCGCTCGCTGTCGTTTGCCAAGAAAATCCTTCTCGCCGCCGCATTGGTGGTGGTTTTCGCCTTCACC 
TGCTTCATCCTCTACAACGATTACCGACAGCGCGAGGCCGTGCGCACGGACACGGAAAACTACCTCGGGGAA 
ATCGGCACCCTGACCGCCAGCAACATCCAGAGCTGGCTGGAAGGCCGCATGCATCTGGTGGAAGGCCTGGCC 
TCGCAACTGGCGCTGCTCGACCAGCCCGACGAGGCGAATATCGCAAGGCAACTGGAACAGCCCGTCTTCAGC 
CGCAATTTCGCGTCGGTCTATCTTGGCGAGGCGGCCAGCGGCGCCTTCACCATGCGCCCCTACGACGCCATG 
CCGGAAGGTTACGACCCACGTACCCGCGCCTGGTACAAGGACGCGCTGGCGGCCGACCGGCTGATCGTCACC 
GAACCCTTCGTCGATGCCGGCACCGGCGAGCAGATCCTCGCCATGTCGCTGCCGGTGCGGCACGCCGGTCAA 
CTGCTGGGCGTCGCCGCCGGCGACATGAAGCTGGAGACCCTGACCGCGATCCTCAATTCCCTGAAGTTCGAT 
GGTGCCGGCTACGCCTTCCTGGTCAGCGACGCCGGCAAGATCCTCCTCCACCCCGACTCCGGGCTGGTCCTG 
AAGACCCTCGCCGAAGCCTATCCCAAGGGCGCACCGAACATCGACCCCGGGGTCCACGAGGTGGAACTCGAC 
GGCCGCAGCCAGTTCGTTTCCTTCACCCCGGTGAAGGGACTGCCCGGCGTGACCTGGTACGTCGCCCTGGTC 
CTCGACCGCGACACCGCCTATTCGATGCTCAGCGAATTCCGCACTTCGGCGATCGTCGCCACGCTGATCGCG 
GTGGTCGGCATCATGCTTCTCCTCGGCATGCTGATCCGCGTACTGATGCAGCCGCTCACCGACATGGGCCGC 
GCCATGCAGGACATCGCCCAGGGCGAAGGCGACCTGACCAAGCGCCTGCGGGTCACCAGCAACGATGAATTC 
GGTACGTTGGCCAATGCCTTCAACCGCTTCGTCGAGCGTATCCACGAATCGATCCGCGAGGTCGCCGGCACC 
GCTCGCCAACTGCACGACGTGGCGCAACTGGTGGTGAACGCCTCGAACTCTTCGATGGCCAACTCCGACGAG 
CAGTCCAACCGTACCAACAGCGTCGCCGCGGCGATCAACGAACTCGGTGCCGCCGCCCAGGAAATCGCCCGC 
AACGCCGCCGATGCCTCGCACCATGCGTCCGACGCCAACCACCAGGCCGAGGACGGCAAGCAGGTGGTCGAG 
CAGACCATCCGCGCGATGAACGAGCTTTCCGAGAAGATCAGCGCCTCCTGCGCCAACATCGAGGCCCTGAAC 
AGCCGCACGGTGAACATCGGCCAGATCCTCGAGGTGATCAAGGGCATCTCCGAGCAGACCAACCTGCTTGCC 
CTCAACGCCGCCATCGAAGCCGCCCGCGCCGGCGAGGCCGGACGCGGCTTCGCGGTGGTCGCCGACGAGGTG 
CGCAACCTGGCCCATCGCGCCCAGGAGTCGGCCCAGCAGATCCAGAAGATGATCGAAGAGCTGCAAGTCGGC 
GCCCGCGAGGCGGTGGCCACCATGACCGAAAGCCAGCGCTACAGCCTGGAGAGCGTGGAGATCGCCAACCGT 
GCCGGCGAACGCCTGGGCAGCGTGACCAGCCGGATCGGCGAGATCGACAGCATGAACCAGTCGGTGGCCACC 
GCCACCGAGGAACAGACCGCGGTGGTCGACTCGCTGAACATGGACATCACCGAGATCAACACCCTCAACCAG 
GAAGGCGTGGAGAACCTCCAGGCCACCCTGCGCGCCTGCGGCGAGCTGGAAGCCCAGGCCGGGCGCCTGCGG 
CACCTGGTGGACAGCTTCAAGATCTGA