ViewGene
Locus Name:
GeneID:
Location:

GeneID:4779
TrivialName: PA14_44820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44820
PAO1 Ortholog Locus:PA1518
Sequence Length:381
Protein Length:126
Start: 3994754
Stop: 3994374
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04907.1|AE004580_7 (AE004580) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 125/126 (99%), Positives = 126/126 (100%)
Sequence:
GTGTCCGCCAGCGGGCGCCCGCAACCCATGGGACGTTTGACCACGCATGTACTGGATTCCGCACACGGCTGC
CCCGGCCATGGCATCAAGATCGAGCTGTACCGGGTAGAAGGCCAGCAACTGGAACTGATCGCCACCACCCTG
ACCAACCACGACGGCCGCTGCGACCAGCCGGTGCTGCAAGGCGAGGACTTCCGTCCCGGGGTCTATCAACTG
GTGTTCAGCGCCGGCGACTACTATCGCGCCCGCGGCGTGCAATTGCCGGAGCCGGCATTCCTCGACCAGGTG
GTGCTGCGTTTCGGCATCGCCTCCGCCGACGATCACTACCATGTGCCGCTGCTGATCTCGCCCTACAGCTAC
TCGACCTATCGCGGCAGCTAG
Translation:
MSASGRPQPMGRLTTHVLDSAHGCPGHGIKIELYRVEGQQLELIATTLTNHDGRCDQPVLQGEDFRPGVYQL
VFSAGDYYRARGVQLPEPAFLDQVVLRFGIASADDHYHVPLLISPYSYSTYRGS*
AnnotationID:4784GeneID:4779
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:39
Gene Name:
Confidence Code:3
GeneProduct:putative transthyretin family protein
Cell Localization:()
Synonyms:PA1518
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00576
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69865.1|AE016625_8 (AE016790) transthyretin family protein [Pseudomonas putida KT2440]
          Length = 117

 Score =  197 bits (502), Expect = 7e-51
 Identities = 94/117 (80%), Positives = 102/117 (87%)

>emb|CAD15823.1| (AL646068) PUTATIVE TRANSTHYRETIN-LIKE PROTEIN PRECURSOR [Ralstonia
           solanacearum]
          Length = 117

 Score =  157 bits (396), Expect = 1e-38
 Identities = 72/117 (61%), Positives = 89/117 (76%)






 
Structural Features:
pfam00576, Transthyretin, Transthyretin precursor (formerly prealbumin).
CD-Length = 111 residues, 100.0% aligned
Score =  150 bits (380), Expect = 5e-38
Identities = 65/116 (56%), Positives = 78/116 (67%), Gaps = 6/116 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15176




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26699




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37297




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4779_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4779
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7154
                           PA1518_tr
                           translation of PA1518
                           126
                           99.20
                           99.99
                           0
                           668.0
     

     
     
187719
                           gb|AAG04907.1|AE004580_7
                           (AE004580) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           126
                           98.41
                           99.99
                           0
                           665.0
     

     
     
187720
                           gb|AAN69865.1|AE016625_8
                           (AE016790) transthyretin family protein [Pseudomonas putida KT2440]
                           126
                           74.60
                           80.95
                           9
                           502.0
     

     
     
187721
                           gb|AAO57134.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           126
                           65.87
                           80.95
                           3
                           459.0
     

     
     
187724
                           gb|AAL43312.1|
                           (AE009181) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           127
                           59.05
                           68.50
                           10
                           387.0
     

     






      

          
GC ORFID: 47781How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1518Glimmer Score: 

          
Start: 959155Stop: 959535

          
Length: 381


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1518 translation of PA1518Homolog Bit Score 261.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene825 (ORF: BLASTX 183.0), t_PA1518 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCGCCAGCGGGCGCCCGCAACCCATGGGACGTTTGACCACGCATGTACTGGATTCCGCACACGGCTGC 
CCCGGCCATGGCATCAAGATCGAGCTGTACCGGGTAGAAGGCCAGCAACTGGAACTGATCGCCACCACCCTG 
ACCAACCACGACGGCCGCTGCGACCAGCCGGTGCTGCAAGGCGAGGACTTCCGTCCCGGGGTCTATCAACTG 
GTGTTCAGCGCCGGCGACTACTATCGCGCCCGCGGCGTGCAATTGCCGGAGCCGGCATTCCTCGACCAGGTG 
GTGCTGCGTTTCGGCATCGCCTCCGCCGACGATCACTACCATGTGCCGCTGCTGATCTCGCCCTACAGCTAC 
TCGACCTATCGCGGCAGCTAG