ViewGene
Locus Name:
GeneID:
Location:

GeneID:4778
TrivialName: PA14_47250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47250
PAO1 Ortholog Locus:PA1314
Sequence Length:387
Protein Length:128
Start: 4209887
Stop: 4209501
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04703.1|AE004560_11 (AE004560) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 128/128 (100%), Positives = 128/128 (100%)
Sequence:
ATGACTTGTGCCTACCGCCGGGAAATCCACCATGCCCACGTGGCGATCCGCGACTGGCTGGCCGGCGACTCA
CGGGCTGACGCGCTGGATGCGTTGATGGCGCGTTTCGCCGAGGACTTCTCGATGGTCACGCCGCATGGCGTG
GTCCTGGACAAGACTGCTCTGGGCGAGCTGTTCCGCAGCAAGGGCGGCACCCGTCCTGGGCTGCGCATCGAG
ATCGACGGCGAGAGTCTGCTGGCTTCAGGCGTGGATGGCGCGACCCTGGCCTATCGGGAAATCCAGTCCGAC
GCGGCGGGTCGCAGCGAGCGCCTGTCCACCGTAGTCCTGCACCGTGACGACGAAGGGCGGCTGTACTGGCGC
CACCTGCAGGAAACCTTCTGCGGCTGA
Translation:
MTCAYRREIHHAHVAIRDWLAGDSRADALDALMARFAEDFSMVTPHGVVLDKTALGELFRSKGGTRPGLRIE
IDGESLLASGVDGATLAYREIQSDAAGRSERLSTVVLHRDDEGRLYWRHLQETFCG*
AnnotationID:4783GeneID:4778
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 06:06:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1314
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL21790.1| (AE008832) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 126

 Score =  103 bits (257), Expect = 2e-22
 Identities = 60/123 (48%), Positives = 80/123 (65%), Gaps = 6/123 (4%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9556




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26697




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37458




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4778_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4778
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7153
                           PA1314_tr
                           translation of PA1314
                           128
                           99.99
                           99.99
                           0
                           666.0
     

     
     
187717
                           gb|AAG04703.1|AE004560_11
                           (AE004560) hypothetical protein PA1314 [Pseudomonas aeruginosa PAO1]
                           128
                           99.99
                           99.99
                           0
                           666.0
     

     
     
187718
                           gb|AAL21790.1|
                           (AE008832) putative cytoplasmic protein [Salmonella typhimurium LT2]
                           131
                           45.80
                           61.06
                           8
                           256.0
     

     






      

          
GC ORFID: 47780How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1314Glimmer Score: 

          
Start: 744022Stop: 744408

          
Length: 387


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1314 translation of PA1314Homolog Bit Score 261.0

          
Other Homologs:  t_PA1314 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTTGTGCCTACCGCCGGGAAATCCACCATGCCCACGTGGCGATCCGCGACTGGCTGGCCGGCGACTCA 
CGGGCTGACGCGCTGGATGCGTTGATGGCGCGTTTCGCCGAGGACTTCTCGATGGTCACGCCGCATGGCGTG 
GTCCTGGACAAGACTGCTCTGGGCGAGCTGTTCCGCAGCAAGGGCGGCACCCGTCCTGGGCTGCGCATCGAG 
ATCGACGGCGAGAGTCTGCTGGCTTCAGGCGTGGATGGCGCGACCCTGGCCTATCGGGAAATCCAGTCCGAC 
GCGGCGGGTCGCAGCGAGCGCCTGTCCACCGTAGTCCTGCACCGTGACGACGAAGGGCGGCTGTACTGGCGC 
CACCTGCAGGAAACCTTCTGCGGCTGA