ViewGene

Locus Name:
GeneID:
Location:

GeneID:4776
TrivialName: PA14_09090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09090
PAO1 Ortholog Locus:PA4240
Sequence Length:390
Protein Length:129
Start: 770346
Stop: 770735
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07628.1|AE004841_6 (AE004841) 30S ribosomal protein S11 [Pseudomonas aeruginosa PAO1]
Identities = 129/129 (100%), Positives = 129/129 (100%)
Sequence:
ATGGCAAAACCTGCTGCTCGTCCCCGTAAGAAAGTCAAAAAGACAGTGGTCGATGGGATCGCCCACATCCAC
GCGTCTTTCAACAACACCATCGTGACCATCACCGACCGTCAGGGCAACGCACTGTCCTGGGCGACCTCCGGT
GGTTCCGGTTTCCGCGGCTCGCGTAAGAGCACCCCGTTCGCTGCCCAGGTAGCGGCCGAGCGTGCCGGCCAG
GCTGCCCTGGAATACGGTCTGAAGAACCTGGACGTCAACGTCAAGGGCCCGGGCCCGGGCCGCGAGTCCGCC
GTTCGCGCTCTGAATGCTTGCGGCTACAAGATCGCCAGCATCACCGACGTAACCCCGATCCCGCATAACGGC
TGCCGTCCGCcGAAAAAGCGTCGCGTGTAA
Translation:
MAKPAARPRKKVKKTVVDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSRKSTPFAAQVAAERAGQ
AALEYGLKNLDVNVKGPGPGRESAVRALNACGYKIASITDVTPIPHNGCRPPKKRRV*
AnnotationID:4781GeneID:4776
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 13:01:01
Gene Name:rpsK
Confidence Code:2
GeneProduct:ribosomal protein S11
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0100,pfam00411
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54191.1| (AE016858) ribosomal protein S11 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 129

 Score =  260 bits (665), Expect = 8e-70
 Identities = 128/129 (99%), Positives = 128/129 (99%)

>gb|AAN66107.1|AE016239_2 (AE016775) ribosomal protein S11 [Pseudomonas putida KT2440]
          Length = 129

 Score =  260 bits (665), Expect = 8e-70
 Identities = 127/129 (98%), Positives = 129/129 (100%)

>gb|AAN53339.1|AE015474_2 (AE015474) ribosomal protein S11 [Shewanella oneidensis MR-1]
          Length = 130

 Score =  227 bits (578), Expect = 1e-59
 Identities = 112/130 (86%), Positives = 120/130 (92%), Gaps = 1/130 (0%)

Structural Features:
COG0100, RpsK, Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
CD-Length = 129 residues, 100.0% aligned
Score =  186 bits (473), Expect = 9e-49
Identities = 91/129 (70%), Positives = 108/129 (83%)

pfam00411, Ribosomal_S11, Ribosomal protein S11.
CD-Length = 110 residues, 100.0% aligned
Score =  152 bits (385), Expect = 1e-38
Identities = 72/110 (65%), Positives = 88/110 (80%)
Genomic Context:
Comment:
ReferenceID:9552
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26693
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36528
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4776_cdd.html
URL:
ReferenceID:36706
Author/Investigator(s): Meek DW, Hayward RS.
Title: Nucleotide sequence of the rpoA-rplQ DNA of Escherichia coli: a second regulatory binding site for protein S4?
PubMed: 6379605
MedLine:
Source:
Nucleic Acids Res. 1984 Jul 25;12(14):5813-21.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6379605
ReferenceID:36757
Author/Investigator(s): Kamp R, Wittmann-Liebold B.
Title: Primary structure of protein S11 from Escherichia coli ribosomes.
PubMed: 7007074
MedLine:
Source:
FEBS Lett. 1980 Nov 17;121(1):117-22.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=81114582&dopt=Abstract
Homologs By Global Alignment
Gene ID:4776

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7151 PA4240_tr translation of PA4240 129 99.99 99.99 0 669.0
187562 gb|AAG07628.1|AE004841_6 (AE004841) 30S ribosomal protein S11 [Pseudomonas aeruginosa PAO1] 129 99.99 99.99 0 669.0
187563 gb|AAO54191.1| (AE016858) ribosomal protein S11 [Pseudomonas syringae pv. tomato str. DC3000] 129 99.22 99.22 0 665.0
187564 gb|AAN66107.1|AE016239_2 (AE016775) ribosomal protein S11 [Pseudomonas putida KT2440] 129 98.44 99.99 0 665.0
187565 gb|AAN53339.1|AE015474_2 (AE015474) ribosomal protein S11 [Shewanella oneidensis MR-1] 130 86.15 92.30 1 580.0
GC ORFID: 47778How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4240Glimmer Score:
Start: 4183593Stop: 4183204
Length: 390
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4240 translation of PA4240Homolog Bit Score 262.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5210 (ORF: BLASTX 260.0), t_PA4240 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAAAACCTGCTGCTCGTCCCCGTAAGAAAGTCAAAAAGACAGTGGTCGATGGGATCGCCCACATCCAC
GCGTCTTTCAACAACACCATCGTGACCATCACCGACCGTCAGGGCAACGCACTGTCCTGGGCGACCTCCGGT
GGTTCCGGTTTCCGCGGCTCGCGTAAGAGCACCCCGTTCGCTGCCCAGGTAGCGGCCGAGCGTGCCGGCCAG
GCTGCCCTGGAATACGGTCTGAAGAACCTGGACGTCAACGTCAAGGGCCCGGGCCCGGGCCGCGAGTCCGCC
GTTCGCGCTCTGAATGCTTGCGGCTACAAGATCGCCAGCATCACCGACGTAACCCCGATCCCGCATAACGGC
TGCCGTCCGCcGAAAAAGCGTCGCGTGTAA