ViewGene
Locus Name:
GeneID:
Location:

GeneID:4775
TrivialName: PA14_10780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10780
PAO1 Ortholog Locus:PA4111
Sequence Length:399
Protein Length:132
Start: 932566
Stop: 932168
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07498.1|AE004827_7 (AE004827) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 132/132 (100%), Positives = 132/132 (100%)
Sequence:
ATGAGCGCTTCCCCGCCCCTCCGCCAGCCCTGCCCGCCCGGCGCCTGCGTCTGCGAACGCGAGCGCCTGGAG
GCGCCCGGCGCGGACCGTCGCATCCTCCTCCTGACCCGCCAGGAAGAGCAGCGCCTGGCCGCTCGCCTGGAA
GCCCTGCGCAGCCTGGAAGACCTGGAACACCTGCTGCGGCGCATGGAGGAACAACTGGGCATCCGCCTGCGG
ATCGCCCCGGCCTTCGGCGAGGTGCGCAGCATGCGCGGCATCCGCATGCGCTTCGAGGAGCAGCCGGGGCTC
TGCCGCAAGACCCGCCAGGCGATTCCCGCCGCCATCCGCCGCGGCCTGGAGAAGCGCCCGGAAGTCGCCTAC
GCCCTGCTCAACGCCCACGACCTGCTGCGCGACGCCTGA
Translation:
MSASPPLRQPCPPGACVCERERLEAPGADRRILLLTRQEEQRLAARLEALRSLEDLEHLLRRMEEQLGIRLR
IAPAFGEVRSMRGIRMRFEEQPGLCRKTRQAIPAAIRRGLEKRPEVAYALLNAHDLLRDA*
AnnotationID:4780GeneID:4775
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 11:11:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4111
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9550




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26691




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4775
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7150
                           PA4111_tr
                           translation of PA4111
                           132
                           99.99
                           99.99
                           0
                           669.0
     

     
     
187557
                           gb|AAG07498.1|AE004827_7
                           (AE004827) hypothetical protein PA4111 [Pseudomonas aeruginosa PAO1]
                           132
                           99.99
                           99.99
                           0
                           669.0
     

     
     
187558
                           gb|AAN69404.1|AE016576_14
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           133
                           66.16
                           80.45
                           1
                           449.0
     

     
     
187560
                           emb|CAE31810.1|
                           (BX640441) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           133
                           62.40
                           74.43
                           1
                           405.0
     

     
     
187561
                           emb|CAE36397.1|
                           (BX640426) conserved hypothetical protein [Bordetella parapertussis]
                           133
                           62.40
                           74.43
                           1
                           405.0
     

     






      

          
GC ORFID: 47777How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4111Glimmer Score: 

          
Start: 4021371Stop: 4021769

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4111 translation of PA4111Homolog Bit Score 262.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene269 (ORF: BLASTX 170.0), t_PA4111 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCTTCCCCGCCCCTCCGCCAGCCCTGCCCGCCCGGCGCCTGCGTCTGCGAACGCGAGCGCCTGGAG 
GCGCCCGGCGCGGACCGTCGCATCCTCCTCCTGACCCGCCAGGAAGAGCAGCGCCTGGCCGCTCGCCTGGAA 
GCCCTGCGCAGCCTGGAAGACCTGGAACACCTGCTGCGGCGCATGGAGGAACAACTGGGCATCCGCCTGCGG 
ATCGCCCCGGCCTTCGGCGAGGTGCGCAGCATGCGCGGCATCCGCATGCGCTTCGAGGAGCAGCCGGGGCTC 
TGCCGCAAGACCCGCCAGGCGATTCCCGCCGCCATCCGCCGCGGCCTGGAGAAGCGCCCGGAAGTCGCCTAC 
GCCCTGCTCAACGCCCACGACCTGCTGCGCGACGCCTGA