ViewGene

Locus Name:
GeneID:
Location:

GeneID:4773
TrivialName: PA14_02850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02850
PAO1 Ortholog Locus:PA0232
Sequence Length:402
Protein Length:133
Start: 252131
Stop: 252532
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03621.1|AE004461_4 (AE004461) gamma-carboxymuconolactone decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 130/133 (97%), Positives = 130/133 (97%)
Sequence:
ATGGACGAGAAACAACGCTACGAAGCCGGCATGCAAGTGCGCCGCGCGGTGCTCGGCGACGCCCACGTCGAG
CGCAGCCTGGCCAACCTGACGCCGTTCAACGAAGAGTTCCAGGAGATGATCACCCGCCACGCCTGGGGCGAC
ATCTGGACCCGTCCGGGGCTGCCGCGACACACCCGCAGCCTGGTCACCATCGCCATGCTGATCGGCATGAAC
CGCAACGAGGAACTCAAGCTGCATCTGAGCGCGGCGAAGAACAACGGGGTGAGCCGCGACGAGATCAAGGAA
GTGATCATGCAGAGCGCCATCTACTGCGGCATTCCCGCGGCCAACGCGACCTTCCACCTGGCCGAATCGGTG
TGGGACGAGCTTGGCGTGGAGTCGCAGCAGACGTCCCGGTAG
Translation:
MDEKQRYEAGMQVRRAVLGDAHVERSLANLTPFNEEFQEMITRHAWGDIWTRPGLPRHTRSLVTIAMLIGMN
RNEELKLHLSAAKNNGVSRDEIKEVIMQSAIYCGIPAANATFHLAESVWDELGVESQQTSR*
AnnotationID:4778GeneID:4773
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 18:06:13
Gene Name:pcaC
Confidence Code:2
GeneProduct:gamma-carboxymuconolactone decarboxylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0599
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9546
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17041
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search (BLASTP).
Reference Type:Blast (text/plain)
Data:PA0232_CDS.cgi
URL:
ReferenceID:26687
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4773

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7146 PA0232_tr translation of PA0232 133 97.74 97.74 0 671.0
187465 gb|AAG03621.1|AE004461_4 (AE004461) gamma-carboxymuconolactone decarboxylase [Pseudomonas aeruginosa PAO1] 133 97.74 97.74 0 671.0
187466 gb|AAN67004.1|AE016328_9 (AE016779) 4-carboxymuconolactone decarboxylase [Pseudomonas putida KT2440] 133 87.21 92.48 3 614.0
187467 gb|AAD39557.1| (AF031417) PcaC-like protein [Pseudomonas putida] 133 86.46 92.48 3 612.0
187468 gb|AAQ92185.1| (AY349612) putative decarboxylase [Pseudomonas fluorescens] 133 84.96 90.97 3 598.0
GC ORFID: 47775How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0232Glimmer Score:
Start: 6053472Stop: 6053873
Length: 402
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0232 translation of PA0232Homolog Bit Score 263.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1098 (ORF: BLASTX 235.0), psyr_15may02_Scaffold4_revised_gene5568 (ORF: BLASTX 114.0), t_PA4486 (ORF: BLASTX 114.0), t_PA0232 (ORF: GLIMMER)
GC ORF Sequence
ATGGACGAGAAACAACGCTACGAAGCCGGCATGCAAGTGCGCCGCGCGGTGCTCGGCGACGCCCACGTCGAG
CGCAGCCTGGCCAACCTGACGCCGTTCAACGAAGAGTTCCAGGAGATGATCACCCGCCACGCCTGGGGCGAC
ATCTGGACCCGTCCGGGGCTGCCGCGACACACCCGCAGCCTGGTCACCATCGCCATGCTGATCGGCATGAAC
CGCAACGAGGAACTCAAGCTGCATCTGAGCGCGGCGAAGAACAACGGGGTGAGCCGCGACGAGATCAAGGAA
GTGATCATGCAGAGCGCCATCTACTGCGGCATTCCCGCGGCCAACGCGACCTTCCACCTGGCCGAATCGGTG
TGGGACGAGCTTGGCGTGGAGTCGCAGCAGACGTCCCGGTAG