ViewGene
Locus Name:
GeneID:
Location:

GeneID:4771
TrivialName: PA14_13390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13390
PAO1 Ortholog Locus:PA3904
Sequence Length:396
Protein Length:131
Start: 1151715
Stop: 1151320
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07291.1|AE004808_1 (AE004808) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/131 (99%), Positives = 130/131 (99%)
Sequence:
ATGAGCGGCAAACCCGCTGCGCGCCTGGGCGATCCGACCGCGTGTCCGCTGCCGGGCCACGGCAGCAACCCG
ATCGTCGGCGGCTCGCCCGACGTCTTCTTCGACCATCGGTCCGCCGCCCGCCAGGGCGACGCCACCGCCTGC
GGCGCCACCCTCAGCGCCAACGTCATCGCCAACGTACTGATCAACGGCAAGCCCGCCACCGTGGTAGGTAGC
GTCGGCACCCACGGCAACCTGGTGGTCGGCGGCGCGGGCACGGTGCTGATCGGCAACAGCGGCGGCGGCGCA
CCCGCTCTCGCCCTCGCCCCACCGAAGCTGTGCCTGCAATGCCTGCTGCTGGCGGCACGCCGCAACCAGGCC
CTGGTGCCCCTGGAAAGCCTCGGCGGCGCACCGTGA
Translation:
MSGKPAARLGDPTACPLPGHGSNPIVGGSPDVFFDHRSAARQGDATACGATLSANVIANVLINGKPATVVGS
VGTHGNLVVGGAGTVLIGNSGGGAPALALAPPKLCLQCLLLAARRNQALVPLESLGGAP*
AnnotationID:4776GeneID:4771
AnnotatorUID: urbach
Modification Date/Time: 2004-03-10 18:06:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4104
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9542




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26683




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4771
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7143
                           PA3904_tr
                           translation of PA3904
                           131
                           99.23
                           99.23
                           0
                           672.0
     

     
     
187442
                           gb|AAG07291.1|AE004808_1
                           (AE004808) hypothetical protein PA3904 [Pseudomonas aeruginosa PAO1]
                           131
                           99.23
                           99.23
                           0
                           672.0
     

     
     
7144
                           PA0824_tr
                           translation of PA0824
                           188
                           38.29
                           46.80
                           73
                           336.0
     

     
     
187444
                           gb|AAG04213.1|AE004517_8
                           (AE004517) hypothetical protein PA0824 [Pseudomonas aeruginosa PAO1]
                           188
                           38.29
                           46.80
                           73
                           336.0
     

     
     
187443
                           gb|AAO58852.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           189
                           38.09
                           44.97
                           73
                           347.0
     

     






      

          
GC ORFID: 47773How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3904Glimmer Score: 

          
Start: 3802223Stop: 3802618

          
Length: 396


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3904 translation of PA3904Homolog Bit Score 263.0

          
Other Homologs:  t_PA3904 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGGCAAACCCGCTGCGCGCCTGGGCGATCCGACCGCGTGTCCGCTGCCGGGCCACGGCAGCAACCCG 
ATCGTCGGCGGCTCGCCCGACGTCTTCTTCGACCATCGGTCCGCCGCCCGCCAGGGCGACGCCACCGCCTGC 
GGCGCCACCCTCAGCGCCAACGTCATCGCCAACGTACTGATCAACGGCAAGCCCGCCACCGTGGTAGGTAGC 
GTCGGCACCCACGGCAACCTGGTGGTCGGCGGCGCGGGCACGGTGCTGATCGGCAACAGCGGCGGCGGCGCA 
CCCGCTCTCGCCCTCGCCCCACCGAAGCTGTGCCTGCAATGCCTGCTGCTGGCGGCACGCCGCAACCAGGCC 
CTGGTGCCCCTGGAAAGCCTCGGCGGCGCACCGTGA