ViewGene
Locus Name:
GeneID:
Location:

GeneID:4770
TrivialName: PA14_53040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53040
PAO1 Ortholog Locus:PA0867
Sequence Length:384
Protein Length:127
Start: 4702829
Stop: 4702446
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04256.1|AE004521_7 (AE004521) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 127/127 (100%), Positives = 127/127 (100%)
Sequence:
ATGAAAAAAGCGCTCTGGCTGCTTCTGGCTGCCGTTCCCGTGGTCCTGGTCGCCTGCGGCGGCAGCGACGAC
GACAAGCAGACCGCCCAGGTCGATTACCTGGCCCTGCCGGGGGATGCCAAGCTGGATACCCGCAGCGTCGAC
TACAAGTGCGAGAACGGTCGCAAGTTCACCGTGCAGTACCTGAACAAGGGCGACAACAGCCTCGCCGTGGTG
CCGGTCAGCGACAACTCGACGCTGGTCTTCAGCAATGTGATTTCCGCCTCCGGCGCCAAGTACGCCGCCGGC
CAGTACATCTGGTGGACCAAGGGCGAGGAAGCCACCCTCTACGGCGACTGGAAGGGCGGCGAGCCCACCGAC
GGGGTCGCCTGCAAGGAGCGTTGA
Translation:
MKKALWLLLAAVPVVLVACGGSDDDKQTAQVDYLALPGDAKLDTRSVDYKCENGRKFTVQYLNKGDNSLAVV
PVSDNSTLVFSNVISASGAKYAAGQYIWWTKGEEATLYGDWKGGEPTDGVACKER*
AnnotationID:4775GeneID:4770
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 11:11:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:(8) Periplasmic
Synonyms:PA0867
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3895
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3895, Predicted periplasmic protein [General function prediction only]
       CD-Length = 112 residues,  99.1% aligned
       Score =  118 bits (298), Expect = 3e-28






   
Genomic Context:






   
Comment:


















    ReferenceID:9540




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26681




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4770
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7142
                           PA0867_tr
                           translation of PA0867
                           127
                           99.99
                           99.99
                           0
                           672.0
     

     
     
187441
                           gb|AAG04256.1|AE004521_7
                           (AE004521) hypothetical protein PA0867 [Pseudomonas aeruginosa PAO1]
                           127
                           99.99
                           99.99
                           0
                           672.0
     

     






      

          
GC ORFID: 47772How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0867Glimmer Score: 

          
Start: 251078Stop: 251461

          
Length: 384


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0867 translation of PA0867Homolog Bit Score 263.0

          
Other Homologs:  t_PA0867 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAAAGCGCTCTGGCTGCTTCTGGCTGCCGTTCCCGTGGTCCTGGTCGCCTGCGGCGGCAGCGACGAC 
GACAAGCAGACCGCCCAGGTCGATTACCTGGCCCTGCCGGGGGATGCCAAGCTGGATACCCGCAGCGTCGAC 
TACAAGTGCGAGAACGGTCGCAAGTTCACCGTGCAGTACCTGAACAAGGGCGACAACAGCCTCGCCGTGGTG 
CCGGTCAGCGACAACTCGACGCTGGTCTTCAGCAATGTGATTTCCGCCTCCGGCGCCAAGTACGCCGCCGGC 
CAGTACATCTGGTGGACCAAGGGCGAGGAAGCCACCCTCTACGGCGACTGGAAGGGCGGCGAGCCCACCGAC 
GGGGTCGCCTGCAAGGAGCGTTGA