ViewGene
Locus Name:
GeneID:
Location:

GeneID:477
TrivialName: PA14_43220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43220
PAO1 Ortholog Locus:PA1646
Sequence Length:1959
Protein Length:652
Start: 3852419
Stop: 3850461
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05035.1|AE004592_6 (AE004592) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 649/652 (99%), Positives = 650/652 (99%)
Sequence:
ATGCTGGGGTTGCTGCGCAGGCGTCTGGCCGATCTCGGCACGGCGAAGAAACTGGCCATCGGTTTTACCCTG
GTCCTGCTATTGACCGCGCTGGTGGCCGCGCTCGCGGTGCTCTCGCTGCATGCGCTGGGGCAGCGCTTCGCG
CGCCTGCAGGAGATGAGCGCGATCAATCGCGACGTGCTGGAGGTTCGCCAGGCCGAGAAGGACTTTGCCCTG
CACGGGGAAAAGAGCGACGCCGAGCGCTTGCGCCAGCGCCTGGCCGCGACCCTTGAACGGGTGGGCCGGCTC
AAGGCCGACGGCGACGCCGATCAGGCGCTTGGCATGGCCGAGGTGGAGCAGGTGCTGGCGGCATACCTCGAA
GCGTTCGGCCGCTTCGAGCAGTCCATCCAGGGACGCCAGTTGGCTTGGGAAAGCGCCAGCTGGTCGCTGAAC
GGCGCCGCCAACAGCCTCGATATCCTCCAGTCCAGCCTGGCCGAGGATGGCGCCTATGCGCTGAAGGAGAGC
CAGGGGCACGACGGCGAGCCGCTGTTGCAGCAGGCGGCCCAGGTCGCCCAGGTCAATCGCCTGGTCCTTCAG
GGGCTGGACGAGGCCCGCTCGCGTCTCGAAGCGCGCGCCGCGGATGCGCAGGAGGGGCCGCCGAAATCGCTG
CGCGAGGCGCTGGAGCTGGCAGCCCTGCTGGAGCAGGCGATCACCGACGATGCCTACGTGTCGGTGGTCAAG
GACGTGCTGACCAATATCCGCGGTTTCGCCGACAAGCTCGCCGAGTATCGCGCCAGCCAGCGCCAGGAGCGG
CAGATGTACGCCGCCATGGGCGAGCGCGCCGGGCAGGTGATGGCGCGTGTCGACCGTAGCTGGGAGGCGCAG
CAGCAGGCCATGCTCCACAGCCTGCGGACAAACTCCCTGCTGATCGTCGGCGCCGCCGTGCTGGCGCTGCTG
GTGGGCCTGGGCGCGGCCTTCGGCATCAGCCTGCTGATCGTCCGTCCGCTGCGCCAGGCGATGGGTGTGGCG
CAGCGGATCGCCGAAGGCGACCTGGCGGTACGGGTCGACAGCGAGCGGCGCGACGAGGTTGGCCAACTGATG
GCCGCGATGCGCGCCATGACCGGCAGCCTGCGCGGTATCGTCAGCCAGTTGCAGGACGGCGTCGGGCGGATT
GCCGGCGCTTCCGAGGCGCTGTCCGGCGTTACCACGCGCACCCGCCTGGGAATCGACAGCCAGCGGGCGGAA
ACCGAACAGGTGGCCACGGCGATGAACCAGATGGCCGCCACCGTCCATGAAGTGGCGCACAACGCCGAGGAA
GCCGCGGGGGCGGCGGAAAGCGCCGACGGCAAGGTCAGCGTCGGCCAGGAGGTGGTACGCCAGACCCTGGAG
CGGATCGAGCGACTGGCCGAGGCGGTGCGCGCGGCCACCGCCAGCGTCGAGGCGCTGAGCGCCGACAGCCAG
CGCATCGGCAGCATGCTGGACGTGATCAAGAGCGTGGCCGAGCAGACCAACCTGCTGGCGCTGAACGCCGCC
ATCGAGGCGGCGCGGGCCGGCGACCAGGGTCGAGGCTTCGCCGTGGTCGCCGACGAGGTGCGGGCGCTGGCG
CGGCGCACCCAACAGTCCACGGCCGAGATCGAGACCCTGATCGGTGCCTTGCAGAATGGCACGCAGCAGGCG
GTGCAGCGTATGCAGCGCAGCCACCAGTTGGTGGACCAGAGCGTCGACGACGCGTTGCAGACCGAGGCGGCG
CTGGGCAACATCGCTACGGCGGTGGCGCTGATCCAGCAGATGAACCAGCAGATCGCCGCGGCCTCCGAGCAG
CAGAGCGCGGTCGCCGAGGAGATCAACCGCAGCGTCACGGCGATCCGCGAGGTGGCCGATCAGTCGGCCCAG
GCCATGCAGTCGACGGCTTCGTCCAGCGAACAACTGGCGGAGCTGGGGCGCGAACTACAGGGCATGGTCAGG
CATTTCCGCTTGTAG
Translation:
MLGLLRRRLADLGTAKKLAIGFTLVLLLTALVAALAVLSLHALGQRFARLQEMSAINRDVLEVRQAEKDFAL
HGEKSDAERLRQRLAATLERVGRLKADGDADQALGMAEVEQVLAAYLEAFGRFEQSIQGRQLAWESASWSLN
GAANSLDILQSSLAEDGAYALKESQGHDGEPLLQQAAQVAQVNRLVLQGLDEARSRLEARAADAQEGPPKSL
REALELAALLEQAITDDAYVSVVKDVLTNIRGFADKLAEYRASQRQERQMYAAMGERAGQVMARVDRSWEAQ
QQAMLHSLRTNSLLIVGAAVLALLVGLGAAFGISLLIVRPLRQAMGVAQRIAEGDLAVRVDSERRDEVGQLM
AAMRAMTGSLRGIVSQLQDGVGRIAGASEALSGVTTRTRLGIDSQRAETEQVATAMNQMAATVHEVAHNAEE
AAGAAESADGKVSVGQEVVRQTLERIERLAEAVRAATASVEALSADSQRIGSMLDVIKSVAEQTNLLALNAA
IEAARAGDQGRGFAVVADEVRALARRTQQSTAEIETLIGALQNGTQQAVQRMQRSHQLVDQSVDDALQTEAA
LGNIATAVALIQQMNQQIAAASEQQSAVAEEINRSVTAIREVADQSAQAMQSTASSSEQLAELGRELQGMVR
HFRL*
AnnotationID:486GeneID:477
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 16:04:19
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis transducer
Cell Localization:()
Synonyms:PA1646
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67438.1|AE016371_4 (AE016780) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 646

 Score =  604 bits (1557), Expect = e-172
 Identities = 341/647 (52%), Positives = 462/647 (71%), Gaps = 12/647 (1%)

>gb|AAO58585.1| (AE016874) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 638

 Score =  376 bits (966), Expect = e-103
 Identities = 251/657 (38%), Positives = 387/657 (58%), Gaps = 36/657 (5%)






 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  93.9% aligned
Score =  184 bits (468), Expect = 2e-47
Identities = 149/386 (38%), Positives = 225/386 (58%), Gaps = 3/386 (0%)

smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CD-Length = 262 residues, 100.0% aligned
Score =  176 bits (447), Expect = 8e-45
Identities = 104/262 (39%), Positives = 160/262 (61%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  99.6% aligned
Score =  165 bits (420), Expect = 1e-41
Identities = 112/250 (44%), Positives = 157/250 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:957




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18099




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37220




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:477_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:477
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
826
                           PA1646_tr
                           translation of PA1646
                           652
                           99.53
                           99.69
                           0
                           3090.0
     

     
     
34423
                           gb|AAG05035.1|AE004592_6
                           (AE004592) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           652
                           99.53
                           99.69
                           0
                           3090.0
     

     
     
34424
                           gb|AAN67438.1|AE016371_4
                           (AE016780) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           657
                           52.35
                           71.38
                           16
                           1564.0
     

     
     
827
                           PA5072_tr
                           translation of PA5072
                           680
                           41.02
                           57.64
                           61
                           1039.0
     

     
     
34426
                           gb|AAG08457.1|AE004920_7
                           (AE004920) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           680
                           41.02
                           57.64
                           61
                           1039.0
     

     






      

          
GC ORFID: 43479How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1646Glimmer Score: 

          
Start: 1101490Stop: 1103448

          
Length: 1959


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1646 translation of PA1646Homolog Bit Score 1194.0

          
Other Homologs:  t_PA5072 (ORF: BLASTX 394.0), psyr_15may02_Scaffold9_revised_gene7996 (ORF: BLASTX 265.0), psyr_15may02_Scaffold13_revised_gene2252 (ORF: BLASTX 262.0), t_PA2652 (ORF: BLASTX 261.0), psyr_15may02_Scaffold3_revised_gene4244 (ORF: BLASTX 250.0), t_PA1561 (ORF: BLASTX 244.0), t_PA2867 (ORF: BLASTX 243.0), psyr_15may02_Scaffold1_revised_gene392 (ORF: BLASTX 242.0), t_PA1646 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGGGTTGCTGCGCAGGCGTCTGGCCGATCTCGGCACGGCGAAGAAACTGGCCATCGGTTTTACCCTG 
GTCCTGCTATTGACCGCGCTGGTGGCCGCGCTCGCGGTGCTCTCGCTGCATGCGCTGGGGCAGCGCTTCGCG 
CGCCTGCAGGAGATGAGCGCGATCAATCGCGACGTGCTGGAGGTTCGCCAGGCCGAGAAGGACTTTGCCCTG 
CACGGGGAAAAGAGCGACGCCGAGCGCTTGCGCCAGCGCCTGGCCGCGACCCTTGAACGGGTGGGCCGGCTC 
AAGGCCGACGGCGACGCCGATCAGGCGCTTGGCATGGCCGAGGTGGAGCAGGTGCTGGCGGCATACCTCGAA 
GCGTTCGGCCGCTTCGAGCAGTCCATCCAGGGACGCCAGTTGGCTTGGGAAAGCGCCAGCTGGTCGCTGAAC 
GGCGCCGCCAACAGCCTCGATATCCTCCAGTCCAGCCTGGCCGAGGATGGCGCCTATGCGCTGAAGGAGAGC 
CAGGGGCACGACGGCGAGCCGCTGTTGCAGCAGGCGGCCCAGGTCGCCCAGGTCAATCGCCTGGTCCTTCAG 
GGGCTGGACGAGGCCCGCTCGCGTCTCGAAGCGCGCGCCGCGGATGCGCAGGAGGGGCCGCCGAAATCGCTG 
CGCGAGGCGCTGGAGCTGGCAGCCCTGCTGGAGCAGGCGATCACCGACGATGCCTACGTGTCGGTGGTCAAG 
GACGTGCTGACCAATATCCGCGGTTTCGCCGACAAGCTCGCCGAGTATCGCGCCAGCCAGCGCCAGGAGCGG 
CAGATGTACGCCGCCATGGGCGAGCGCGCCGGGCAGGTGATGGCGCGTGTCGACCGTAGCTGGGAGGCGCAG 
CAGCAGGCCATGCTCCACAGCCTGCGGACAAACTCCCTGCTGATCGTCGGCGCCGCCGTGCTGGCGCTGCTG 
GTGGGCCTGGGCGCGGCCTTCGGCATCAGCCTGCTGATCGTCCGTCCGCTGCGCCAGGCGATGGGTGTGGCG 
CAGCGGATCGCCGAAGGCGACCTGGCGGTACGGGTCGACAGCGAGCGGCGCGACGAGGTTGGCCAACTGATG 
GCCGCGATGCGCGCCATGACCGGCAGCCTGCGCGGTATCGTCAGCCAGTTGCAGGACGGCGTCGGGCGGATT 
GCCGGCGCTTCCGAGGCGCTGTCCGGCGTTACCACGCGCACCCGCCTGGGAATCGACAGCCAGCGGGCGGAA 
ACCGAACAGGTGGCCACGGCGATGAACCAGATGGCCGCCACCGTCCATGAAGTGGCGCACAACGCCGAGGAA 
GCCGCGGGGGCGGCGGAAAGCGCCGACGGCAAGGTCAGCGTCGGCCAGGAGGTGGTACGCCAGACCCTGGAG 
CGGATCGAGCGACTGGCCGAGGCGGTGCGCGCGGCCACCGCCAGCGTCGAGGCGCTGAGCGCCGACAGCCAG 
CGCATCGGCAGCATGCTGGACGTGATCAAGAGCGTGGCCGAGCAGACCAACCTGCTGGCGCTGAACGCCGCC 
ATCGAGGCGGCGCGGGCCGGCGACCAGGGTCGAGGCTTCGCCGTGGTCGCCGACGAGGTGCGGGCGCTGGCG 
CGGCGCACCCAACAGTCCACGGCCGAGATCGAGACCCTGATCGGTGCCTTGCAGAATGGCACGCAGCAGGCG 
GTGCAGCGTATGCAGCGCAGCCACCAGTTGGTGGACCAGAGCGTCGACGACGCGTTGCAGACCGAGGCGGCG 
CTGGGCAACATCGCTACGGCGGTGGCGCTGATCCAGCAGATGAACCAGCAGATCGCCGCGGCCTCCGAGCAG 
CAGAGCGCGGTCGCCGAGGAGATCAACCGCAGCGTCACGGCGATCCGCGAGGTGGCCGATCAGTCGGCCCAG 
GCCATGCAGTCGACGGCTTCGTCCAGCGAACAACTGGCGGAGCTGGGGCGCGAACTACAGGGCATGGTCAGG 
CATTTCCGCTTGTAG