ViewGene

Locus Name:
GeneID:
Location:

GeneID:4768
TrivialName: PA14_70590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70590
PAO1 Ortholog Locus:PA5347
Sequence Length:393
Protein Length:130
Start: 6289933
Stop: 6289541
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08732.1|AE004947_2 (AE004947) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/130 (100%), Positives = 130/130 (100%)
Sequence:
ATGAAATTTCGTCTTCTCCTGTGGATGCTTGGTCGCCTGATGGCCAAGGCCAGCCGCGACAATCCCGCTTTC
CAGAAGCAGCTCGAGGGCAAGGACCTGGTGTTCCAGTTGCATACCCTCGATGGCAAGGTGGCGCGCCACTAC
CTGGTCAGGGACCTGCGCGTCAGCAGCAAGCGCGGTACCCATCCGCAACCGGCATTTTCCCTGGGGTTCAAG
GACGGAGCCTACGGTTTCGCCGCGATGACTTCGAAGAACCCGCAGTTGGCCTTCATGCAGGGCATCCAGAAC
AAGGACATCCAGATACAGGGCAATCCGGCGCTGGTGATCTGGTTCCAGGGTCTGGTGAAGTACCTCAAGCCG
AAGAAGAAGGCGCCGGAGAAGAAAGCCGCCTGA
Translation:
MKFRLLLWMLGRLMAKASRDNPAFQKQLEGKDLVFQLHTLDGKVARHYLVRDLRVSSKRGTHPQPAFSLGFK
DGAYGFAAMTSKNPQLAFMQGIQNKDIQIQGNPALVIWFQGLVKYLKPKKKAPEKKAA*
AnnotationID:4773GeneID:4768
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 06:06:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5347
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9536
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26677
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4768

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7139 PA5347_tr translation of PA5347 130 99.99 99.99 0 675.0
187388 gb|AAG08732.1|AE004947_2 (AE004947) hypothetical protein PA5347 [Pseudomonas aeruginosa PAO1] 130 99.99 99.99 0 675.0
187389 gb|AAN70877.1|AE016732_2 (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440] 130 70.00 83.07 6 493.0
187390 gb|AAO58889.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 186 44.62 56.98 61 465.0
GC ORFID: 47770How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5347Glimmer Score:
Start: 5553622Stop: 5553230
Length: 393
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5347 translation of PA5347Homolog Bit Score 264.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4213 (ORF: BLASTX 185.0), t_PA5347 (ORF: GLIMMER)
GC ORF Sequence
ATGAAATTTCGTCTTCTCCTGTGGATGCTTGGTCGCCTGATGGCCAAGGCCAGCCGCGACAATCCCGCTTTC
CAGAAGCAGCTCGAGGGCAAGGACCTGGTGTTCCAGTTGCATACCCTCGATGGCAAGGTGGCGCGCCACTAC
CTGGTCAGGGACCTGCGCGTCAGCAGCAAGCGCGGTACCCATCCGCAACCGGCATTTTCCCTGGGGTTCAAG
GACGGAGCCTACGGTTTCGCCGCGATGACTTCGAAGAACCCGCAGTTGGCCTTCATGCAGGGCATCCAGAAC
AAGGACATCCAGATACAGGGCAATCCGGCGCTGGTGATCTGGTTCCAGGGTCTGGTGAAGTACCTCAAGCCG
AAGAAGAAGGCGCCGGAGAAGAAAGCCGCCTGA