ViewGene

Locus Name:
GeneID:
Location:

GeneID:4767
TrivialName: PA14_18310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18310
PAO1 Ortholog Locus:PA3558
Sequence Length:414
Protein Length:137
Start: 1571249
Stop: 1570836
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06946.1|AE004776_9 (AE004776) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 135/137 (98%), Positives = 136/137 (99%)
Sequence:
ATGAACGCGCTACGCGGCTGGCTGGCGGCGCTGGGCAGCATGCTGCTGGCCAGCGCCGCCCAGCTCGGCATG
CGCTGGGGCATGAGCCGCCTGCCGCTACCGGAAGCCTGGGCCGGGCAAACGCCGGAGCGCGCCGCGCTGCTC
GCGGTAGCCCTGGCGGTGACGGCCTACGCCGCCTCCCTGCTGTGCTGGCTGGCCGCCCTGCGCCACTTGCCG
CTGGGCCGCGCCTACAGCCTGTTGAGCGCCAGCTACGCGCTGGTCTACCTGCTGGCGGCGAGCCTGCCGGCG
TTCGATGAAACCTTCAGTACCAGCAAGACCCTGGGCGTAGGCCTGGTGGTGCTCGGCGTGTTGACCGTCAAC
GCCCGCCGCACCGCTGCCGCGCCCGCGCATCATCCGTCGAGGAAAGCACCATGA
Translation:
MNALRGWLAALGSMLLASAAQLGMRWGMSRLPLPEAWAGQTPERAALLAVALAVTAYAASLLCWLAALRHLP
LGRAYSLLSASYALVYLLAASLPAFDETFSTSKTLGVGLVVLGVLTVNARRTAAAPAHHPSRKAP*
AnnotationID:4772GeneID:4767
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 05:05:24
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3558
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC91220.1| (AJ414152) putative membrane protein [Yersinia pestis CO92]
          Length = 128

 Score = 95.1 bits (235), Expect = 6e-20
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 4/128 (3%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:9534
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26675
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31988
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4767_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4767

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7138 PA3558_tr translation of PA3558 137 98.54 99.27 0 675.0
187387 gb|AAG06946.1|AE004776_9 (AE004776) hypothetical protein PA3558 [Pseudomonas aeruginosa PAO1] 137 98.54 99.27 0 675.0
GC ORFID: 47769How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3558Glimmer Score:
Start: 3382686Stop: 3383099
Length: 414
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3558 translation of PA3558Homolog Bit Score 264.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2589 (ORF: BLASTX 136.0), t_PA3558 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGCGCTACGCGGCTGGCTGGCGGCGCTGGGCAGCATGCTGCTGGCCAGCGCCGCCCAGCTCGGCATG
CGCTGGGGCATGAGCCGCCTGCCGCTACCGGAAGCCTGGGCCGGGCAAACGCCGGAGCGCGCCGCGCTGCTC
GCGGTAGCCCTGGCGGTGACGGCCTACGCCGCCTCCCTGCTGTGCTGGCTGGCCGCCCTGCGCCACTTGCCG
CTGGGCCGCGCCTACAGCCTGTTGAGCGCCAGCTACGCGCTGGTCTACCTGCTGGCGGCGAGCCTGCCGGCG
TTCGATGAAACCTTCAGTACCAGCAAGACCCTGGGCGTAGGCCTGGTGGTGCTCGGCGTGTTGACCGTCAAC
GCCCGCCGCACCGCTGCCGCGCCCGCGCATCATCCGTCGAGGAAAGCACCATGA