ViewGene
Locus Name:
GeneID:
Location:

GeneID:4766
TrivialName: PA14_35830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35830
PAO1 Ortholog Locus:
Sequence Length:999
Protein Length:332
Start: 3188265
Stop: 3189263
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68590.1|AE016490_7 (AE016785) Tn4652, cointegrate resolution protein T, putative [Pseudomonas putida KT2440]
Identities = 272/332 (81%), Positives = 296/332 (89%)
Sequence:
ATGGCCCGTGGTGGAATCAACAAAGCTGTCGTGCAGAAAGCCAGGCATGCCCTCCTCGCCCGCGGCGCCCAC
CCCAGTATTGATGCGGTGCGCATCGAGCTGGGCAACACCGGTTCAAAGACCACCATTCACCGCTACCTGAAA
GAGCTCGAAGACGCCGAGCGCGGCCGGGATGCGGCTTCGATCCCGCTCAGCGAACAGCTGGCCAATCTGGTC
AGCCAACTGGCAGATCAGCTAGAGGAGGAGGCGCAGGCCGCGGTGGCCCTGGAGCGCGAACAACTGACCCGC
GAACGGCTCGATTACCAGCATCGGTTTCGACAGGCCGAAAGCCGCATCCAACAACTGGAAGGCCAGACCGCG
CTCGACGCGGAACGGCTTCAGACCACTCATCACGAGTTGCAGCAGGCACGCGAGCAACGGCAACAGGCCGAG
ATCGAGAACGCCCGCCTACAGCAGGCTAATCGTGACCTCGAGGAGCGGCACAAGGATCGCGACGCACAGATC
CACTCGCTGGAGGAAAAACACCGACATGCGCGCGACACCCTGGAGCACTACCGACAGGCCAGCAAGGAACAG
CGTGAGCAGGAACAACGCCGACACGAGTCGCAGGTACAACAACTGCAACTAGAACTGCGGCAACTGCAGCAG
ACCTTGATAATCAAGCAGGACGAGCTGACGCAACTGAACCGCGACAATGCACGCTTGCTCACCGAGGCGCGG
CAGTTGCAAAAAGAGCGACATGCACAGCAACAGCTAGTGGCGCAGAAAACTCAGGCCCTGGAGGCTCTGCAG
AGCACGCTGGCCGGCTCCGAACGCACGAATGAAGCCCTTGATCAGCGTTGTCGCACATTGCAGGAGGAGGTG
TCCCGGCTGAGCGAAGCCTCCGCGCTTCAGGCGCAGCAGACGCAGGGCCTGCAGAAGCGCTTGGTCGAAGCC
ACTACACAGCTGAAGCTACTCGGGGCACCGCTTGCGAACAGCGATGGCGCATGTAGCACATGA
Translation:
MARGGINKAVVQKARHALLARGAHPSIDAVRIELGNTGSKTTIHRYLKELEDAERGRDAASIPLSEQLANLV
SQLADQLEEEAQAAVALEREQLTRERLDYQHRFRQAESRIQQLEGQTALDAERLQTTHHELQQAREQRQQAE
IENARLQQANRDLEERHKDRDAQIHSLEEKHRHARDTLEHYRQASKEQREQEQRRHESQVQQLQLELRQLQQ
TLIIKQDELTQLNRDNARLLTEARQLQKERHAQQQLVAQKTQALEALQSTLAGSERTNEALDQRCRTLQEEV
SRLSEASALQAQQTQGLQKRLVEATTQLKLLGAPLANSDGACST*
AnnotationID:4771GeneID:4766
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 16:04:37
Gene Name:tnpT
Confidence Code:2
GeneProduct:Cointegrate resolution protein T
Cell Localization:()
Synonyms:resT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|24984591|gb|AAN68590.1|  Tn4652, cointegrate resolution protein T, putative [Pseudomonas putida KT2440]
     Length=332
     Score =  513 bits (1320),  Expect = 5e-144
     Identities = 272/332 (81%), Positives = 296/332 (89%), Gaps = 0/332 (0%)

gi|33114142|gb|AAP94699.1|  putative cointegrate resolution protein T [Pseudomonas aeruginosa]
     Length=333
     Score =  475 bits (1222),  Expect = 1e-132
     Identities = 249/333 (74%), Positives = 285/333 (85%), Gaps = 1/333 (0%)

gi|26106130|dbj|BAC41570.1|  cointegrase [Pseudomonas resinovorans]
     Length=333
     Score =  468 bits (1204),  Expect = 1e-130
     Identities = 250/333 (75%), Positives = 276/333 (82%), Gaps = 1/333 (0%)

gi|67086425|gb|EAM05894.1|  Tn4652, cointegrate resolution protein T, putative [Azotobacter vinelandii AvOP]
     Length=340
     Score =  307 bits (786),  Expect = 4e-82
     Identities = 171/325 (52%), Positives = 218/325 (67%), Gaps = 0/325 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9532




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26673




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4766
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
187379
                           gb|AAN68590.1|AE016490_7
                           (AE016785) Tn4652, cointegrate resolution protein T, putative [Pseudomonas putida KT2440]
                           332
                           81.92
                           89.15
                           0
                           1320.0
     

     
     
187380
                           dbj|BAB83833.1|
                           (AB077820) TnpT protein [Pseudomonas putida]
                           332
                           81.62
                           88.85
                           0
                           1316.0
     

     
     
187381
                           emb|CAC86783.1|
                           (AJ344068) putative cointegrate resolution protein T [Pseudomonas putida]
                           332
                           81.62
                           88.85
                           0
                           1314.0
     

     
     
187382
                           gb|AAD44278.1|AF151431_7
                           (AF151431) putative cointegrate resolution protein T [Pseudomonas putida]
                           337
                           80.11
                           87.24
                           5
                           1309.0
     

     
     
187384
                           dbj|BAC41570.1|
                           (AB088420) cointegrase [Pseudomonas resinovorans]
                           333
                           75.07
                           82.88
                           1
                           1206.0
     

     






      

          
GC ORFID: 47768How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold7_revised_gene7209Glimmer Score: 

          
Start: 1765651Stop: 1764653

          
Length: 999


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold7_revised_gene7209 related to: gi|5524531|gb|AAD44278.1|AF151431_7 (AF151431) putative cointegrate resolution protein T [Pseudomonas putida]Homolog Bit Score 265.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7209 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCGTGGTGGAATCAACAAAGCTGTCGTGCAGAAAGCCAGGCATGCCCTCCTCGCCCGCGGCGCCCAC 
CCCAGTATTGATGCGGTGCGCATCGAGCTGGGCAACACCGGTTCAAAGACCACCATTCACCGCTACCTGAAA 
GAGCTCGAAGACGCCGAGCGCGGCCGGGATGCGGCTTCGATCCCGCTCAGCGAACAGCTGGCCAATCTGGTC 
AGCCAACTGGCAGATCAGCTAGAGGAGGAGGCGCAGGCCGCGGTGGCCCTGGAGCGCGAACAACTGACCCGC 
GAACGGCTCGATTACCAGCATCGGTTTCGACAGGCCGAAAGCCGCATCCAACAACTGGAAGGCCAGACCGCG 
CTCGACGCGGAACGGCTTCAGACCACTCATCACGAGTTGCAGCAGGCACGCGAGCAACGGCAACAGGCCGAG 
ATCGAGAACGCCCGCCTACAGCAGGCTAATCGTGACCTCGAGGAGCGGCACAAGGATCGCGACGCACAGATC 
CACTCGCTGGAGGAAAAACACCGACATGCGCGCGACACCCTGGAGCACTACCGACAGGCCAGCAAGGAACAG 
CGTGAGCAGGAACAACGCCGACACGAGTCGCAGGTACAACAACTGCAACTAGAACTGCGGCAACTGCAGCAG 
ACCTTGATAATCAAGCAGGACGAGCTGACGCAACTGAACCGCGACAATGCACGCTTGCTCACCGAGGCGCGG 
CAGTTGCAAAAAGAGCGACATGCACAGCAACAGCTAGTGGCGCAGAAAACTCAGGCCCTGGAGGCTCTGCAG 
AGCACGCTGGCCGGCTCCGAACGCACGAATGAAGCCCTTGATCAGCGTTGTCGCACATTGCAGGAGGAGGTG 
TCCCGGCTGAGCGAAGCCTCCGCGCTTCAGGCGCAGCAGACGCAGGGCCTGCAGAAGCGCTTGGTCGAAGCC 
ACTACACAGCTGAAGCTACTCGGGGCACCGCTTGCGAACAGCGATGGCGCATGTAGCACATGA