ViewGene
Locus Name:
GeneID:
Location:

GeneID:4765
TrivialName: PA14_09880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09880
PAO1 Ortholog Locus:PA4177
Sequence Length:402
Protein Length:133
Start: 849247
Stop: 848846
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07564.1|AE004834_4 (AE004834) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/133 (93%), Positives = 126/133 (94%)
Sequence:
ATGAGCCAGACTTTCCACGGCAGTTGCCTGTGCGGCGCGCTGCGCTACCGCCTGTCGTCGCCCCCGCGGGCG
CTCTCCCACCGTCATTGCAGCCAGTGCCGCAAGGCCCATGGGGCGGCATTCGCCAGTTATGGCAGCGTCCCC
GTCGCGGACCTGCACATCGACCGCGGCGCCGACCTGCTCGCCGCGTTCAGCTCCTCCCCCGCCGTGCTCCGG
CGCTTCTGCTCGCGCTGCGGCTCGCCGCTGTTCTGGTCAAGGAGCGAAGGCAAGTTCGCCGACTGGGTATCG
GTCGCCCTCGGCAGCCTGGACACGCCCTTCCCATCGGAGAAACAGAAGCATGTCCAGGTCGCGTCGATGGCC
TGCTGGTACCGGATAGCCGACGACTGGCCGCGGTTCGACTGA
Translation:
MSQTFHGSCLCGALRYRLSSPPRALSHRHCSQCRKAHGAAFASYGSVPVADLHIDRGADLLAAFSSSPAVLR
RFCSRCGSPLFWSRSEGKFADWVSVALGSLDTPFPSEKQKHVQVASMACWYRIADDWPRFD*
AnnotationID:4770GeneID:4765
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4177
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9530




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26671




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36867




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4765_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4765
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7136
                           PA4177_tr
                           translation of PA4177
                           133
                           93.23
                           94.73
                           0
                           677.0
     

     
     
187375
                           gb|AAG07564.1|AE004834_4
                           (AE004834) hypothetical protein PA4177 [Pseudomonas aeruginosa PAO1]
                           133
                           93.23
                           94.73
                           0
                           677.0
     

     
     
187376
                           gb|AAN67787.1|AE016410_3
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           135
                           58.51
                           72.59
                           7
                           431.0
     

     
     
7137
                           PA2706_tr
                           translation of PA2706
                           137
                           48.90
                           59.12
                           10
                           329.0
     

     
     
187377
                           gb|AAG06094.1|AE004698_10
                           (AE004698) hypothetical protein PA2706 [Pseudomonas aeruginosa PAO1]
                           137
                           48.90
                           59.12
                           10
                           329.0
     

     






      

          
GC ORFID: 47767How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4177Glimmer Score: 

          
Start: 4104690Stop: 4105091

          
Length: 402


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4177 translation of PA4177Homolog Bit Score 265.0

          
Other Homologs:  t_PA2706 (ORF: BLASTX 132.0), t_PA4177 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGACTTTCCACGGCAGTTGCCTGTGCGGCGCGCTGCGCTACCGCCTGTCGTCGCCCCCGCGGGCG 
CTCTCCCACCGTCATTGCAGCCAGTGCCGCAAGGCCCATGGGGCGGCATTCGCCAGTTATGGCAGCGTCCCC 
GTCGCGGACCTGCACATCGACCGCGGCGCCGACCTGCTCGCCGCGTTCAGCTCCTCCCCCGCCGTGCTCCGG 
CGCTTCTGCTCGCGCTGCGGCTCGCCGCTGTTCTGGTCAAGGAGCGAAGGCAAGTTCGCCGACTGGGTATCG 
GTCGCCCTCGGCAGCCTGGACACGCCCTTCCCATCGGAGAAACAGAAGCATGTCCAGGTCGCGTCGATGGCC 
TGCTGGTACCGGATAGCCGACGACTGGCCGCGGTTCGACTGA