ViewGene
Locus Name:
GeneID:
Location:

GeneID:4764
TrivialName: PA14_30400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30400
PAO1 Ortholog Locus:PA2605
Sequence Length:396
Protein Length:131
Start: 2633329
Stop: 2632934
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05993.1|AE004689_5 (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 131/131 (100%), Positives = 131/131 (100%)
Sequence:
ATGAAATTCGCCATCGCCCTATTCGACCCTCCCCACTCCCCCGCCGCCCGCCGCGCGCTGCGCTTCAGCGAA
GCCGCGCTGGCCGGCGGGCACGAAATCGTCCGCCTGTTCTTCTACCAGGACGGCGTGCACAGCGCCTCGGCC
AACGTCGTGAGCGGCCAGGACGAGTTCGACCTGCCCGCCGCCTGGCGCGAGTTGGTCGAGCGCAACGGCCTG
GACGCCGTGGTCTGCATCGCCGCCGCCCTGCGCCGCGGCGTGCTGAACGCCGAGGAAGCCGAACGCTACGGC
CGTCCCGGCGCCAACCTTGGCGCACCATGGGAGCTGTCCGGACTCGGCCAGTTGCACGAGGCGGCGCAAAGC
GCGGACCGCCTGGTCTGCTTCGGAGGCGACCGATGA
Translation:
MKFAIALFDPPHSPAARRALRFSEAALAGGHEIVRLFFYQDGVHSASANVVSGQDEFDLPAAWRELVERNGL
DAVVCIAAALRRGVLNAEEAERYGRPGANLGAPWELSGLGQLHEAAQSADRLVCFGGDR*
AnnotationID:4769GeneID:4764
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:36
Gene Name:
Confidence Code:3
GeneProduct:putative sulfur reductase protein
Cell Localization:()
Synonyms:dsrE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1553,pfam02635
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69587.1|AE016592_6 (AE016788) dsrE protein [Pseudomonas putida KT2440]
          Length = 130

 Score =  200 bits (508), Expect = 1e-51
 Identities = 97/130 (74%), Positives = 108/130 (83%)

>gb|AAO56816.1| (AE016868) DsrE family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 130

 Score =  194 bits (492), Expect = 9e-50
 Identities = 94/129 (72%), Positives = 108/129 (83%)

>gb|AAC35396.1| (U84760) DsrE [Allochromatium vinosum]
          Length = 130

 Score =  112 bits (279), Expect = 5e-25
 Identities = 60/129 (46%), Positives = 84/129 (65%), Gaps = 1/129 (0%)






 
Structural Features:
COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction 
[Inorganic ion transport and metabolism]
CD-Length = 126 residues, 100.0% aligned
Score =  145 bits (367), Expect = 2e-36
Identities = 65/128 (50%), Positives = 83/128 (64%), Gaps = 3/128 (2%)

pfam02635, DrsE, DsrE/DsrF-like family. DsrE is a small soluble protein involved in 
intracellular sulfur reduction. This family also includes DsrF.
CD-Length = 119 residues, 100.0% aligned
Score =  114 bits (286), Expect = 4e-27
Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 12/129 (9%)








   
Genomic Context:






   
Comment:


















    ReferenceID:9528




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26669




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33162




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4764_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4764
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7135
                           PA2605_tr
                           translation of PA2605
                           131
                           99.99
                           99.99
                           0
                           678.0
     

     
     
187361
                           gb|AAG05993.1|AE004689_5
                           (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           131
                           99.99
                           99.99
                           0
                           678.0
     

     
     
187362
                           gb|AAN69587.1|AE016592_6
                           (AE016788) dsrE protein [Pseudomonas putida KT2440]
                           131
                           74.04
                           82.44
                           1
                           508.0
     

     
     
187363
                           gb|AAO56816.1|
                           (AE016868) DsrE family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           131
                           71.75
                           82.44
                           1
                           491.0
     

     
     
187364
                           gb|AAC35396.1|
                           (U84760) DsrE [Allochromatium vinosum]
                           132
                           45.45
                           63.63
                           3
                           280.0
     

     






      

          
GC ORFID: 47766How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2605Glimmer Score: 

          
Start: 2320597Stop: 2320992

          
Length: 396


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2605 translation of PA2605Homolog Bit Score 265.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2742 (ORF: BLASTX 194.0), t_PA2605 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATTCGCCATCGCCCTATTCGACCCTCCCCACTCCCCCGCCGCCCGCCGCGCGCTGCGCTTCAGCGAA 
GCCGCGCTGGCCGGCGGGCACGAAATCGTCCGCCTGTTCTTCTACCAGGACGGCGTGCACAGCGCCTCGGCC 
AACGTCGTGAGCGGCCAGGACGAGTTCGACCTGCCCGCCGCCTGGCGCGAGTTGGTCGAGCGCAACGGCCTG 
GACGCCGTGGTCTGCATCGCCGCCGCCCTGCGCCGCGGCGTGCTGAACGCCGAGGAAGCCGAACGCTACGGC 
CGTCCCGGCGCCAACCTTGGCGCACCATGGGAGCTGTCCGGACTCGGCCAGTTGCACGAGGCGGCGCAAAGC 
GCGGACCGCCTGGTCTGCTTCGGAGGCGACCGATGA