ViewGene
Locus Name:
GeneID:
Location:

GeneID:4763
TrivialName: PA14_31360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31360
PAO1 Ortholog Locus:PA2565
Sequence Length:426
Protein Length:141
Start: 2727061
Stop: 2727486
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05953.1|AE004684_8 (AE004684) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/141 (98%), Positives = 140/141 (99%)
Sequence:
ATGGATAGCCATCAGCAGCCATACGCGTCGCAGGCGCAGGCCGATACCACCCTGTTTCCCGAGCAGACCCGC
GAGAGTCTCCAGGCCCTGGCCGTCAAGTTGCAGCCGCTGATCGAGGGCCACCGCCTGGACAACCTGGTGGAT
CTGCTGTCACTGCTTTCGGATATCGTCGATCTGCTGGACCCGGCCATGGTGGACAGGCTGGCGCAGCTCTTC
GAGCAGGTCACCAGTGTCGGTTGGTCAGTCGGTAACGCGGTACGCGTGGCCAAGGCGGAGCTGCTCCGAGAG
CAGCCGCCAAGCCTGAAAGACCTGCTGCGGTTGTTGCGCGACGCCGATACCCGGCGCGGGCTGGCTCTCGTG
CTGGGTAGTTTGCGCAGCCTGGGGTGCCAACTCGCCGCGGAGCAGGAGGTTGCCCATGGTGCATGA
Translation:
MDSHQQPYASQAQADTTLFPEQTRESLQALAVKLQPLIEGHRLDNLVDLLSLLSDIVDLLDPAMVDRLAQLF
EQVTSVGWSVGNAVRVAKAELLREQPPSLKDLLRLLRDADTRRGLALVLGSLRSLGCQLAAEQEVAHGA*
AnnotationID:4768GeneID:4763
AnnotatorUID: diggins
Modification Date/Time: 2004-07-12 13:01:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
Remote CDD Search failed.
Local CDD Search found matches only with E values > 0.








   
Genomic Context:






   
Comment:


















    ReferenceID:9526




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26667




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4763
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7134
                           PA2565_tr
                           translation of PA2565
                           141
                           98.58
                           99.29
                           0
                           677.0
     

     
     
187360
                           gb|AAG05953.1|AE004684_8
                           (AE004684) hypothetical protein PA2565 [Pseudomonas aeruginosa PAO1]
                           141
                           98.58
                           99.29
                           0
                           677.0
     

     






      

          
GC ORFID: 47765How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2565Glimmer Score: 

          
Start: 2226865Stop: 2226440

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2565 translation of PA2565Homolog Bit Score 265.0

          
Other Homologs:  t_PA2565 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATAGCCATCAGCAGCCATACGCGTCGCAGGCGCAGGCCGATACCACCCTGTTTCCCGAGCAGACCCGC 
GAGAGTCTCCAGGCCCTGGCCGTCAAGTTGCAGCCGCTGATCGAGGGCCACCGCCTGGACAACCTGGTGGAT 
CTGCTGTCACTGCTTTCGGATATCGTCGATCTGCTGGACCCGGCCATGGTGGACAGGCTGGCGCAGCTCTTC 
GAGCAGGTCACCAGTGTCGGTTGGTCAGTCGGTAACGCGGTACGCGTGGCCAAGGCGGAGCTGCTCCGAGAG 
CAGCCGCCAAGCCTGAAAGACCTGCTGCGGTTGTTGCGCGACGCCGATACCCGGCGCGGGCTGGCTCTCGTG 
CTGGGTAGTTTGCGCAGCCTGGGGTGCCAACTCGCCGCGGAGCAGGAGGTTGCCCATGGTGCATGA