ViewGene

Locus Name:
GeneID:
Location:

GeneID:4760
TrivialName: PA14_48040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48040
PAO1 Ortholog Locus:PA1250
Sequence Length:396
Protein Length:131
Start: 4277278
Stop: 4276883
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04639.1|AE004554_7 (AE004554) alkaline proteinase inhibitor AprI [Pseudomonas aeruginosa PAO1]
Identities = 131/131 (100%), Positives = 131/131 (100%)
Sequence:
ATGTCGGCAAGCGCGAAGCTCTCCAGGATGGTTTGCTTGCTCTGCGGTTTTTTCAGCACAGGTATCAGTATG
GCCAGCAGTCTGATTCTTCTCAGCGCTTCCGATCTCGCCGGGCAATGGACCCTGCAGCAGGACGAGGCGCCC
GCGATCTGCCATCTGGAGCTGCGCGACAGCGAAGTGGCGGAAGCCAGTGGCTACGACCTGGGCGGCGATACC
GCCTGCCTCACGCGCTGGCTGCCCAGCGAGCCGCGCGCCTGGAGGCCCACCCCGGCCGGGATCGCGCTGCTC
GAACGCGGCGGCCTGACCCTGATGCTCCTCGGTCGCCAGGGCGAGGGCGACTACCGGGTGCAGAAGGGCGAC
GGCGGGCAGTTGGTGCTGCGCCGCGCGACGCCCTAG
Translation:
MSASAKLSRMVCLLCGFFSTGISMASSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDT
ACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRATP*
AnnotationID:4765GeneID:4760
AnnotatorUID: diggins
Modification Date/Time: 2005-05-25 12:12:06
Gene Name:aprI
Confidence Code:1
GeneProduct:alkaline proteinase inhibitor AprI
Cell Localization:(8) Periplasmic
Synonyms:inh
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAD09852.1| (AF083061) protease inhibitor Inh [Pseudomonas fluorescens]
          Length = 122

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 8/106 (7%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:9520
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26661
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38037
Author/Investigator(s): Duong F, Lazdunski A, Cami B, Murgier M.
Title: Sequence of a cluster of genes controlling synthesis and secretion of alkaline protease in Pseudomonas aeruginosa: relationships to other secretory pathways.
PubMed: 1427098
MedLine:
Source:
Gene. 1992 Nov 2;121(1):47-54.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1427098
Homologs By Global Alignment
Gene ID:4760

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7131 PA1250_tr translation of PA1250 131 99.99 99.99 0 677.0
187355 gb|AAG04639.1|AE004554_7 (AE004554) alkaline proteinase inhibitor AprI [Pseudomonas aeruginosa PAO1] 131 99.99 99.99 0 677.0
187356 emb|CAA45859.1| (X64558) Inhibitor [Pseudomonas aeruginosa] 131 99.99 99.99 0 677.0
GC ORFID: 47762How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1250Glimmer Score:
Start: 676631Stop: 677026
Length: 396
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1250 translation of PA1250Homolog Bit Score 265.0
Other Homologs: t_PA1250 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGGCAAGCGCGAAGCTCTCCAGGATGGTTTGCTTGCTCTGCGGTTTTTTCAGCACAGGTATCAGTATG
GCCAGCAGTCTGATTCTTCTCAGCGCTTCCGATCTCGCCGGGCAATGGACCCTGCAGCAGGACGAGGCGCCC
GCGATCTGCCATCTGGAGCTGCGCGACAGCGAAGTGGCGGAAGCCAGTGGCTACGACCTGGGCGGCGATACC
GCCTGCCTCACGCGCTGGCTGCCCAGCGAGCCGCGCGCCTGGAGGCCCACCCCGGCCGGGATCGCGCTGCTC
GAACGCGGCGGCCTGACCCTGATGCTCCTCGGTCGCCAGGGCGAGGGCGACTACCGGGTGCAGAAGGGCGAC
GGCGGGCAGTTGGTGCTGCGCCGCGCGACGCCCTAG