ViewGene
Locus Name:
GeneID:
Location:

GeneID:476
TrivialName: PA14_71720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71720
PAO1 Ortholog Locus:PA5435
Sequence Length:1824
Protein Length:607
Start: 6391239
Stop: 6389416
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08820.1|AE004956_4 (AE004956) probable transcarboxylase subunit [Pseudomonas aeruginosa PAO1]
Identities = 606/607 (99%), Positives = 606/607 (99%)
Sequence:
ATGAGCAACACCATCCAAGCGAAGAAGACCGGCGTCACCGATACCATCCTGCGCGATGCCCACCAGTCGCTG
CTGGCGACCCGCATGCGCACCGAGGACATGCTGCCGATCTGCGACAAGCTCGACCGCGTCGGCTACTGGTCG
CTGGAAGTCTGGGGCGGCGCGACCTTCGACGCCTGCGTGCGCTTCCTCAAGGAAGACCCGTGGGAACGCCTG
CGCAAGCTCAAGGCAGCGCTGCCCAACACCCGCCTGCAGATGCTCCTGCGCGGGCAGAACCTGCTCGGCTAC
CGCCACTACAGCGACGATGTGGTGCGCGCCTTCGTGGCCAAGGCGGCGGTCAACGGCATCGACGTGTTCCGC
ATCTTCGACGCGATGAACGACGTGCGTAACCTGCGCGTCTCCATCGAGGCGGTGAAGGCCGCCGGCAAGCAC
GCCCAGGGCACCATCTGCTACACCACCAGCCCGGTGCACATCATCGAGGCCTTCGTCGCCCAGGGCAAGGCG
ATGGCCGACATGGGCGTCGACTCCATCGCCATCAAGGACATGGCCGGCCTGCTCACCCCCTATGCCACCGGC
GACCTGGTCAAGGCCCTGAAGGACGCCCTGCCGCTGGACGTGGTGGTGCATTCCCATGACACCGCCGGTGTC
GCCAGCATGTGCCAGCTGAAGGCCGTGGAAAACGGCGCCGACCGTATCGACACGGCGATCTCCAGCATGGCC
TGGGGCACCAGCCACCCGGGCACCGAGTCGATGGTCGCGGCGCTGCGTGGCACCCCCTACGACACCGGCCTG
GACCTGGAGCTGATCCAGGAGATCGGCATGTACTTCCACGCGGTGCGCAAGAAGTACCACCAGTTCGAGAGC
GAATTCACCGGCGTGGATACCCGCGTGCAGGTCAACCAGGTGCCGGGCGGGATGATTTCCAACCTGGCCAAC
CAGCTCAAGGAGCAGGGCGCGCTGAACCGTATGGGCGAGGTGCTCGAGGAAATCCCGCGGGTCCGCGCCGAC
CTCGGTTTCCCGCCGCTGGTGACGCCGACTTCGCAGATCGTCGGCACCCAGGCGTTCTTCAACGTGCTCGCC
GGCGAGCGCTACAAGACCATCACCAACGAAGTGAAGCTGTACCTGCAGGGCCGTTATGGCAAGGCCCCCGGC
GAGGTCAACGAGCAACTGCGGCGCCAGGCCATCGGCAGCGAGGAAGTCATCGACGTGCGCCCGGCCGACCTG
ATCAAGCCGGAGCTGAACAAGCTGCGCAGCGAGATCGGCAACCTGGCCAAGTCCGAGGAAGACGTACTCACC
TACGCGATGTTCCCGGACATCGGGCGCAAGTTCCTCGAAGAGCGTGAGGCCGGCACCCTGAAGCCCGAGGAA
CTGCTGCCGATTCCCACCGGCAAGGGCGTCGCCGCCGCCGGCGCGGAAGGCACCCCGACCGAGTTCGTCATC
GACGTGCACGGCGAGACCTACCGCGTCGACATCACCGGGGTCGGCGTGAAGAGCGACAACAAGCGGCACTTC
TACCTGTCCATCGACGGCATGCCGGAAGAAGTGGTGTTCGAGCCGCTCAACGAATATGTCGCCGGCTCCGCC
AGCGGCCGCAAGCATGCCAGCGAGCCGGGCCACGTCAGCACCACCATGCCGGGCAACATCGTCGACGTGCTG
GTGAAGGAAGGCGATAGCGTCAAGGCCGGCCAGGCGGTGTTGATCACCGAGGCGATGAAGATGGAAACCGAG
GTCCAGGCCGGCATCGCCGGTACGGTCAAGGCGATCCACGTGGCCAAGGGCGACCGGGTCAACCCGGGCGAG
ATCCTGATCGAGATTGCGGGCTGA
Translation:
MSNTIQAKKTGVTDTILRDAHQSLLATRMRTEDMLPICDKLDRVGYWSLEVWGGATFDACVRFLKEDPWERL
RKLKAALPNTRLQMLLRGQNLLGYRHYSDDVVRAFVAKAAVNGIDVFRIFDAMNDVRNLRVSIEAVKAAGKH
AQGTICYTTSPVHIIEAFVAQGKAMADMGVDSIAIKDMAGLLTPYATGDLVKALKDALPLDVVVHSHDTAGV
ASMCQLKAVENGADRIDTAISSMAWGTSHPGTESMVAALRGTPYDTGLDLELIQEIGMYFHAVRKKYHQFES
EFTGVDTRVQVNQVPGGMISNLANQLKEQGALNRMGEVLEEIPRVRADLGFPPLVTPTSQIVGTQAFFNVLA
GERYKTITNEVKLYLQGRYGKAPGEVNEQLRRQAIGSEEVIDVRPADLIKPELNKLRSEIGNLAKSEEDVLT
YAMFPDIGRKFLEEREAGTLKPEELLPIPTGKGVAAAGAEGTPTEFVIDVHGETYRVDITGVGVKSDNKRHF
YLSIDGMPEEVVFEPLNEYVAGSASGRKHASEPGHVSTTMPGNIVDVLVKEGDSVKAGQAVLITEAMKMETE
VQAGIAGTVKAIHVAKGDRVNPGEILIEIAG*
AnnotationID:485GeneID:476
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:11
Gene Name:
Confidence Code:3
GeneProduct:putative transcarboxylase subunit
Cell Localization:()
Synonyms:oadA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative oxaloacetate decarboxylase, alpha subunit
Functional Category Confidence Code:5
COGs:COG5016,pfam02436
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70911.1|AE016735_4 (AE016794) oxaloacetate decarboxylase, alpha subunit [Pseudomonas
           putida KT2440]
          Length = 602

 Score = 1039 bits (2687), Expect = 0.0
 Identities = 525/601 (87%), Positives = 553/601 (92%)

>gb|AAO58929.1| (AE016876) oxaloacetate decarboxylase, alpha subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 602

 Score = 1030 bits (2663), Expect = 0.0
 Identities = 516/600 (86%), Positives = 554/600 (92%)

>emb|CAA67994.1| (X99678) oxaloacetate decarboxylase alpha-chain [Legionella
           pneumophila]
          Length = 596

 Score =  706 bits (1821), Expect = 0.0
 Identities = 358/597 (59%), Positives = 448/597 (75%), Gaps = 6/597 (1%)






 
Structural Features:
COG5016, Pyruvate/oxaloacetate carboxyltransferase 
[Energy production and conversion]
CD-Length = 472 residues, 100.0% aligned
Score =  740 bits (1913), Expect = 0.0
Identities = 303/476 (63%), Positives = 360/476 (75%), Gaps = 8/476 (1%)

pfam02436, PYC_OADA, Conserved carboxylase domain.
CD-Length = 210 residues,  93.8% aligned
Score =  182 bits (463), Expect = 9e-47
Identities = 81/205 (39%), Positives = 110/205 (53%), Gaps = 23/205 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:955




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18097




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34677




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:476_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:476
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
825
                           PA5435_tr
                           translation of PA5435
                           607
                           99.83
                           99.83
                           0
                           3093.0
     

     
     
34372
                           gb|AAG08820.1|AE004956_4
                           (AE004956) probable transcarboxylase subunit [Pseudomonas aeruginosa PAO1]
                           607
                           99.83
                           99.83
                           0
                           3093.0
     

     
     
34373
                           gb|AAN70911.1|AE016735_4
                           (AE016794) oxaloacetate decarboxylase, alpha subunit [Pseudomonas putida KT2440]
                           607
                           86.49
                           91.10
                           5
                           2687.0
     

     
     
34374
                           gb|AAO58929.1|
                           (AE016876) oxaloacetate decarboxylase, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           607
                           85.00
                           91.26
                           5
                           2663.0
     

     
     
34375
                           emb|CAA67994.1|
                           (X99678) oxaloacetate decarboxylase alpha-chain [Legionella pneumophila]
                           610
                           59.01
                           74.09
                           17
                           1825.0
     

     






      

          
GC ORFID: 43478How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5435Glimmer Score: 

          
Start: 5654928Stop: 5653105

          
Length: 1824


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5435 translation of PA5435Homolog Bit Score 1196.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4181 (ORF: BLASTX 1028.0), t_PA5435 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACACCATCCAAGCGAAGAAGACCGGCGTCACCGATACCATCCTGCGCGATGCCCACCAGTCGCTG 
CTGGCGACCCGCATGCGCACCGAGGACATGCTGCCGATCTGCGACAAGCTCGACCGCGTCGGCTACTGGTCG 
CTGGAAGTCTGGGGCGGCGCGACCTTCGACGCCTGCGTGCGCTTCCTCAAGGAAGACCCGTGGGAACGCCTG 
CGCAAGCTCAAGGCAGCGCTGCCCAACACCCGCCTGCAGATGCTCCTGCGCGGGCAGAACCTGCTCGGCTAC 
CGCCACTACAGCGACGATGTGGTGCGCGCCTTCGTGGCCAAGGCGGCGGTCAACGGCATCGACGTGTTCCGC 
ATCTTCGACGCGATGAACGACGTGCGTAACCTGCGCGTCTCCATCGAGGCGGTGAAGGCCGCCGGCAAGCAC 
GCCCAGGGCACCATCTGCTACACCACCAGCCCGGTGCACATCATCGAGGCCTTCGTCGCCCAGGGCAAGGCG 
ATGGCCGACATGGGCGTCGACTCCATCGCCATCAAGGACATGGCCGGCCTGCTCACCCCCTATGCCACCGGC 
GACCTGGTCAAGGCCCTGAAGGACGCCCTGCCGCTGGACGTGGTGGTGCATTCCCATGACACCGCCGGTGTC 
GCCAGCATGTGCCAGCTGAAGGCCGTGGAAAACGGCGCCGACCGTATCGACACGGCGATCTCCAGCATGGCC 
TGGGGCACCAGCCACCCGGGCACCGAGTCGATGGTCGCGGCGCTGCGTGGCACCCCCTACGACACCGGCCTG 
GACCTGGAGCTGATCCAGGAGATCGGCATGTACTTCCACGCGGTGCGCAAGAAGTACCACCAGTTCGAGAGC 
GAATTCACCGGCGTGGATACCCGCGTGCAGGTCAACCAGGTGCCGGGCGGGATGATTTCCAACCTGGCCAAC 
CAGCTCAAGGAGCAGGGCGCGCTGAACCGTATGGGCGAGGTGCTCGAGGAAATCCCGCGGGTCCGCGCCGAC 
CTCGGTTTCCCGCCGCTGGTGACGCCGACTTCGCAGATCGTCGGCACCCAGGCGTTCTTCAACGTGCTCGCC 
GGCGAGCGCTACAAGACCATCACCAACGAAGTGAAGCTGTACCTGCAGGGCCGTTATGGCAAGGCCCCCGGC 
GAGGTCAACGAGCAACTGCGGCGCCAGGCCATCGGCAGCGAGGAAGTCATCGACGTGCGCCCGGCCGACCTG 
ATCAAGCCGGAGCTGAACAAGCTGCGCAGCGAGATCGGCAACCTGGCCAAGTCCGAGGAAGACGTACTCACC 
TACGCGATGTTCCCGGACATCGGGCGCAAGTTCCTCGAAGAGCGTGAGGCCGGCACCCTGAAGCCCGAGGAA 
CTGCTGCCGATTCCCACCGGCAAGGGCGTCGCCGCCGCCGGCGCGGAAGGCACCCCGACCGAGTTCGTCATC 
GACGTGCACGGCGAGACCTACCGCGTCGACATCACCGGGGTCGGCGTGAAGAGCGACAACAAGCGGCACTTC 
TACCTGTCCATCGACGGCATGCCGGAAGAAGTGGTGTTCGAGCCGCTCAACGAATATGTCGCCGGCTCCGCC 
AGCGGCCGCAAGCATGCCAGCGAGCCGGGCCACGTCAGCACCACCATGCCGGGCAACATCGTCGACGTGCTG 
GTGAAGGAAGGCGATAGCGTCAAGGCCGGCCAGGCGGTGTTGATCACCGAGGCGATGAAGATGGAAACCGAG 
GTCCAGGCCGGCATCGCCGGTACGGTCAAGGCGATCCACGTGGCCAAGGGCGACCGGGTCAACCCGGGCGAG 
ATCCTGATCGAGATTGCGGGCTGA