ViewGene
Locus Name:
GeneID:
Location:

GeneID:4759
TrivialName: PA14_50480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50480
PAO1 Ortholog Locus:PA1077
Sequence Length:408
Protein Length:135
Start: 4485652
Stop: 4485245
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04466.1|AE004539_8 (AE004539) flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa PAO1]
Identities = 135/135 (100%), Positives = 135/135 (100%)
Sequence:
ATGAGCATCAGTTTCGACAGAGCACTCGGTATCCACCAGCAGGCCCTCAGCTTCCGCGCCCAGCGCGCCGAA
GTGCTGGCCAACAACCTGGCCAACGCCGATACCCCGAACTACAAGGCTCGCGACCTGGACTTCGCCGCGGTT
CTCGCCGAGCAGAAGGACAAGGCCGCCAAGGGTACCTTCGCCACCCGCACCACCAACGAGCGGCATATCGCC
GCCGAAGGTTTCGGCATGGGCGAGGGCAGCCTGCAGTACCGCATCCCGGTCCAGCCGTCGATCGACCAGAAC
ACTGTCGACGCCCAGATCGAGCAGGCCAACTACGCCGAGAACGCCATGCACTTCCAGGCGTCCTTCACCTTC
CTCAACAGCAAATTCAAAGGGCTGGTCAGCGCCCTGCGTGGAGAGTAA
Translation:
MSISFDRALGIHQQALSFRAQRAEVLANNLANADTPNYKARDLDFAAVLAEQKDKAAKGTFATRTTNERHIA
AEGFGMGEGSLQYRIPVQPSIDQNTVDAQIEQANYAENAMHFQASFTFLNSKFKGLVSALRGE*
AnnotationID:4764GeneID:4759
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 15:03:56
Gene Name:flgB
Confidence Code:2
GeneProduct:flagellar basal-body rod protein FlgB
Cell Localization:()
Synonyms:PA1077
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1815
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG1815, FlgB, Flagellar basal body protein [Cell motility and secretion]
      CD-Length = 133 residues, 100.0% aligned 
      Score =  130 bits (329), Expect = 4e-32






   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL 






   
Comment:


















    ReferenceID:9518




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26659




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4759
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7130
                           PA1077_tr
                           translation of PA1077
                           135
                           99.99
                           99.99
                           0
                           678.0
     

     
     
187321
                           gb|AAG04466.1|AE004539_8
                           (AE004539) flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa PAO1]
                           135
                           99.99
                           99.99
                           0
                           678.0
     

     
     
187323
                           gb|AAN69969.1|AE016635_5
                           (AE016790) flagellar basal-body rod protein FlgB [Pseudomonas putida KT2440]
                           136
                           74.26
                           84.55
                           1
                           506.0
     

     
     
187322
                           gb|AAO55451.1|
                           (AE016862) flagellar basal-body rod protein FlgB [Pseudomonas syringae pv. tomato str. DC3000]
                           135
                           71.85
                           85.18
                           0
                           506.0
     

     
     
187325
                           gb|AAN56248.1|AE015762_5
                           (AE015762) flagellar basal-body rod protein FlgB [Shewanella oneidensis MR-1]
                           139
                           48.20
                           67.62
                           9
                           316.0
     

     






      

          
GC ORFID: 47761How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1077Glimmer Score: 

          
Start: 468256Stop: 468663

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1077 translation of PA1077Homolog Bit Score 265.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7890 (ORF: BLASTX 201.0), t_PA1077 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCAGTTTCGACAGAGCACTCGGTATCCACCAGCAGGCCCTCAGCTTCCGCGCCCAGCGCGCCGAA 
GTGCTGGCCAACAACCTGGCCAACGCCGATACCCCGAACTACAAGGCTCGCGACCTGGACTTCGCCGCGGTT 
CTCGCCGAGCAGAAGGACAAGGCCGCCAAGGGTACCTTCGCCACCCGCACCACCAACGAGCGGCATATCGCC 
GCCGAAGGTTTCGGCATGGGCGAGGGCAGCCTGCAGTACCGCATCCCGGTCCAGCCGTCGATCGACCAGAAC 
ACTGTCGACGCCCAGATCGAGCAGGCCAACTACGCCGAGAACGCCATGCACTTCCAGGCGTCCTTCACCTTC 
CTCAACAGCAAATTCAAAGGGCTGGTCAGCGCCCTGCGTGGAGAGTAA