ViewGene
Locus Name:
GeneID:
Location:

GeneID:4756
TrivialName: PA14_70930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70930
PAO1 Ortholog Locus:PA5371
Sequence Length:405
Protein Length:134
Start: 6319833
Stop: 6320237
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08756.1|AE004949_3 (AE004949) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/134 (100%), Positives = 134/134 (100%)
Sequence:
ATGATCGAGCTTGAACAAGAAGACCCCATTCCCCAGGGAGACCTGGCCTTGCAGATTACCGCGCTGCCGCGC
GAAACCAACGGTTTCGGCGATATCTACGGCGGTTGGCTGGTATCCCAGATGGACCTGGCGGGAACCGCCATG
GCCAGCAAGATCGCCGGCGGCCGTATCGCCACCGTCGCCATCGACCGCATGGCCTTCATGGTGCCGGTCGCG
GTAGGTGCCCAGCTTTCCTTCTATACCCAGACCCTGGAAGTCGGTCGCAGCTCGATCCGCATGCTGGTCGAG
GTGTGGAGCGACGACCCGCTGTCCAGCGAATGGCGCAAAGTCACCGAGGCGGTGTTCGTGTTCGTCGCCATC
GATGGCAGCGGGCGCACCCGCCCGGTCCCGCCACGCCGGGGCTAG
Translation:
MIELEQEDPIPQGDLALQITALPRETNGFGDIYGGWLVSQMDLAGTAMASKIAGGRIATVAIDRMAFMVPVA
VGAQLSFYTQTLEVGRSSIRMLVEVWSDDPLSSEWRKVTEAVFVFVAIDGSGRTRPVPPRRG*
AnnotationID:4761GeneID:4756
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:35
Gene Name:
Confidence Code:3
GeneProduct:putative long-chain acyl-CoA thioester hydrolase
Cell Localization:()
Synonyms:PA5371
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1607,pfam03061
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70896.1|AE016733_8 (AE016794) long-chain acyl-CoA thioester hydrolase family protein
           [Pseudomonas putida KT2440]
          Length = 132

 Score =  247 bits (631), Expect = 7e-66
 Identities = 121/132 (91%), Positives = 130/132 (98%)

>gb|AAO58908.1| (AE016876) cytosolic long-chain acyl-CoA thioester hydrolase family
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 133

 Score =  240 bits (612), Expect = 1e-63
 Identities = 117/133 (87%), Positives = 127/133 (95%)

>emb|CAC91002.1| (AJ414151) putative acyl-CoA thioester hydrolase [Yersinia pestis
           CO92]
          Length = 149

 Score =  120 bits (300), Expect = 2e-27
 Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 5/129 (3%)






 
Structural Features:
COG1607, Acyl-CoA_hydrolase_[Lipid_metabolism], Acyl-CoA hydrolase [Lipid metabolism]
CD-Length = 157 residues,  82.2% aligned
Score =  148 bits (376), Expect = 2e-37
Identities = 54/129 (41%), Positives = 79/129 (61%)

pfam03061, 4HBT, Thioesterase superfamily. 
CD-Length = 78 residues,  98.7% aligned
Score = 61.0 bits (148), Expect = 5e-11
Identities = 25/77 (32%), Positives = 44/77 (57%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9513




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26653




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34729




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4756_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4756
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7127
                           PA5371_tr
                           translation of PA5371
                           134
                           99.99
                           99.99
                           0
                           681.0
     

     
     
187247
                           gb|AAG08756.1|AE004949_3
                           (AE004949) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           134
                           99.99
                           99.99
                           0
                           681.0
     

     
     
187248
                           gb|AAN70896.1|AE016733_8
                           (AE016794) long-chain acyl-CoA thioester hydrolase family protein [Pseudomonas putida KT2440]
                           134
                           90.29
                           97.01
                           2
                           631.0
     

     
     
187249
                           gb|AAO58908.1|
                           (AE016876) cytosolic long-chain acyl-CoA thioester hydrolase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           134
                           87.31
                           94.77
                           1
                           612.0
     

     
     
187281
                           emb|CAD60256.1|
                           (AJ536297) acyl-CoA thioester-like hydrolase [Defluvibacter lusatiensis]
                           141
                           41.84
                           58.15
                           12
                           272.0
     

     






      

          
GC ORFID: 47758How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5371Glimmer Score: 

          
Start: 5583522Stop: 5583926

          
Length: 405


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5371 translation of PA5371Homolog Bit Score 266.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2905 (ORF: BLASTX 241.0), t_PA5371 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAGCTTGAACAAGAAGACCCCATTCCCCAGGGAGACCTGGCCTTGCAGATTACCGCGCTGCCGCGC 
GAAACCAACGGTTTCGGCGATATCTACGGCGGTTGGCTGGTATCCCAGATGGACCTGGCGGGAACCGCCATG 
GCCAGCAAGATCGCCGGCGGCCGTATCGCCACCGTCGCCATCGACCGCATGGCCTTCATGGTGCCGGTCGCG 
GTAGGTGCCCAGCTTTCCTTCTATACCCAGACCCTGGAAGTCGGTCGCAGCTCGATCCGCATGCTGGTCGAG 
GTGTGGAGCGACGACCCGCTGTCCAGCGAATGGCGCAAAGTCACCGAGGCGGTGTTCGTGTTCGTCGCCATC 
GATGGCAGCGGGCGCACCCGCCCGGTCCCGCCACGCCGGGGCTAG