ViewGene
Locus Name:
GeneID:
Location:

GeneID:4755
TrivialName: PA14_69630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69630
PAO1 Ortholog Locus:PA5274
Sequence Length:405
Protein Length:134
Start: 6213624
Stop: 6213220
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08659.1|AE004940_3 (AE004940) nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PAO1]
Identities = 134/134 (100%), Positives = 134/134 (100%)
Sequence:
ATGAGCACGCCGCCGATCACCATCACTCGTCTGGACCTGCAGCGCCTGGAGCGCCTGCTGGATGGCCTGGAC
GAATTCGGACCCGCCGCCGAGGCGCTGGAGGCCGAACTGTCGCGCGCCCAGGTGGTGGGGCATGACGAGATT
CCGCCGGGCGTCGTGACCATGAACTCCACCGTGCGTTGCCGCGAGGAAAGCAGCGGCAAGGAGTACACCTTG
ACCCTGGTCTATCCCGAAGACGTGGCCGGCGAAGGCAAGGTCTCGATCCTCGCGCCGGTGGGCACCGCGCTG
CTGGGCCTGACCATCGGCCAGACCATCGACTGGCCGGCGCCGAGCGGCAAGACGCTGAAGCTGACCCTGCTG
GAAATCGAATACCAGCCGGAAGCCGCCGGCGACTACGCGCGCTGA
Translation:
MSTPPITITRLDLQRLERLLDGLDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTL
TLVYPEDVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEYQPEAAGDYAR*
AnnotationID:4760GeneID:4755
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:50
Gene Name:rnk
Confidence Code:2
GeneProduct:nucleoside diphosphate kinase regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:transcription elongation factor
Functional Category Confidence Code:5
COGs:COG0782
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70788.1|AE016722_9 (AE016793) nucleoside diphosphate kinase regulator [Pseudomonas
           putida KT2440]
          Length = 136

 Score =  190 bits (483), Expect = 1e-48
 Identities = 96/134 (71%), Positives = 111/134 (82%), Gaps = 2/134 (1%)

>gb|AAO53775.1| (AE016856) regulator of nucleoside diphosphate kinase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 135

 Score =  183 bits (464), Expect = 2e-46
 Identities = 90/132 (68%), Positives = 105/132 (79%), Gaps = 1/132 (0%)

>emb|CAD86041.1| (BX321863) Prokaryotic transcription elongation factor GreA/GreB
           [Nitrosomonas europaea ATCC 19718]
          Length = 137

 Score =  141 bits (356), Expect = 6e-34
Identities = 76/133 (57%), Positives = 97/133 (72%), Gaps = 2/133 (1%)






 
Structural Features:
COG0782, GreA, Transcription elongation factor [Transcription]
CD-Length = 151 residues,  86.1% aligned
Score = 88.4 bits (219), Expect = 2e-19
Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 10/131 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9511




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26651




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34816




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4755_cdd.html


    		




 
URL:

















    ReferenceID:35724




  
Author/Investigator(s):
        Schlictman D, Shankar S, Chakrabarty AM.





  
Title:
        The Escherichia coli genes sspA and rnk can functionally replace the Pseudomonas aeruginosa alginate regulatory gene algR2.




  
PubMed:
        7565093


MedLine:
        




    
Source:
Mol Microbiol. 1995 Apr;16(2):309-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7565093









           
Homologs By Global Alignment 

           

       



     
Gene ID:4755
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7126
                           PA5274_tr
                           translation of PA5274
                           134
                           99.99
                           99.99
                           0
                           679.0
     

     
     
187217
                           gb|AAG08659.1|AE004940_3
                           (AE004940) nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa PAO1]
                           134
                           99.99
                           99.99
                           0
                           679.0
     

     
     
187218
                           gb|AAN70788.1|AE016722_9
                           (AE016793) nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440]
                           136
                           70.58
                           81.61
                           2
                           483.0
     

     
     
187219
                           gb|AAO53775.1|
                           (AE016856) regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           136
                           67.64
                           78.67
                           3
                           465.0
     

     
     
187220
                           emb|CAD86041.1|
                           (BX321863) Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas europaea ATCC 19718]
                           137
                           56.93
                           72.26
                           3
                           358.0
     

     






      

          
GC ORFID: 47757How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5274Glimmer Score: 

          
Start: 5477311Stop: 5476907

          
Length: 405


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5274 translation of PA5274Homolog Bit Score 266.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3967 (ORF: BLASTX 178.0), t_PA5274 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACGCCGCCGATCACCATCACTCGTCTGGACCTGCAGCGCCTGGAGCGCCTGCTGGATGGCCTGGAC 
GAATTCGGACCCGCCGCCGAGGCGCTGGAGGCCGAACTGTCGCGCGCCCAGGTGGTGGGGCATGACGAGATT 
CCGCCGGGCGTCGTGACCATGAACTCCACCGTGCGTTGCCGCGAGGAAAGCAGCGGCAAGGAGTACACCTTG 
ACCCTGGTCTATCCCGAAGACGTGGCCGGCGAAGGCAAGGTCTCGATCCTCGCGCCGGTGGGCACCGCGCTG 
CTGGGCCTGACCATCGGCCAGACCATCGACTGGCCGGCGCCGAGCGGCAAGACGCTGAAGCTGACCCTGCTG 
GAAATCGAATACCAGCCGGAAGCCGCCGGCGACTACGCGCGCTGA