ViewGene

Locus Name:
GeneID:
Location:

GeneID:4753
TrivialName: PA14_62890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62890
PAO1 Ortholog Locus:PA4754
Sequence Length:408
Protein Length:135
Start: 5611309
Stop: 5610902
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08140.1|AE004889_3 (AE004889) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/135 (99%), Positives = 134/135 (99%)
Sequence:
TTGCGCGCAGGCGCGATCAGTTGGCTGCTGGCCCAGACGTTCTGGGTCGGCGGCCTCTGGTTGCTGCAGTTC
GTGGTCCTGCCTGCGTTGGCCAAGACCGGACTGGCGCCGTTACTGGTGGAAACCGTAGCCGCGGCGTTGACG
CCGCTGCTGATCGGCTTCGCCGGATTCTGTGCGGTGCTGCAGGCGCTGGTGTTGGTGTCGAGCCACGGGCCG
AGGAGCCTCTGGCGAGACCTTCGCGGTCAGTTGTTGCTCGCCGTCGCGCTGCTCTGCCTGGTGTATTTCCTG
GTGCGTGGGCTGGCGCCCGAGGCGGTGCGCTGGCTGCTGTTCAACTACCTGGCGGTGGCGATGTGTGGCCTG
CTGCTGGTGTTGCAGCCGGTACCGGGGCGGGACGAGGAAGGCGTCTGA
Translation:
MRAGAISWLLAQTFWVGGLWLLQFVVLPALAKTGLAPLLVETVAAALTPLLIGFAGFCAVLQALVLVSSHGP
RSLWRDLRGQLLLAVALLCLVYFLVRGLAPEAVRWLLFNYLAVAMCGLLLVLQPVPGRDEEGV*
AnnotationID:4758GeneID:4753
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 09:09:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4754
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15174
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26647
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4753

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7124 PA4754_tr translation of PA4754 135 99.25 99.25 0 681.0
187108 gb|AAG08140.1|AE004889_3 (AE004889) hypothetical protein PA4754 [Pseudomonas aeruginosa PAO1] 135 98.51 99.25 0 679.0
GC ORFID: 47755How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4754Glimmer Score:
Start: 4874989Stop: 4874582
Length: 408
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4754 translation of PA4754Homolog Bit Score 266.0
Other Homologs: t_PA4754 (ORF: GLIMMER)
GC ORF Sequence
TTGCGCGCAGGCGCGATCAGTTGGCTGCTGGCCCAGACGTTCTGGGTCGGCGGCCTCTGGTTGCTGCAGTTC
GTGGTCCTGCCTGCGTTGGCCAAGACCGGACTGGCGCCGTTACTGGTGGAAACCGTAGCCGCGGCGTTGACG
CCGCTGCTGATCGGCTTCGCCGGATTCTGTGCGGTGCTGCAGGCGCTGGTGTTGGTGTCGAGCCACGGGCCG
AGGAGCCTCTGGCGAGACCTTCGCGGTCAGTTGTTGCTCGCCGTCGCGCTGCTCTGCCTGGTGTATTTCCTG
GTGCGTGGGCTGGCGCCCGAGGCGGTGCGCTGGCTGCTGTTCAACTACCTGGCGGTGGCGATGTGTGGCCTG
CTGCTGGTGTTGCAGCCGGTACCGGGGCGGGACGAGGAAGGCGTCTGA