ViewGene
Locus Name:
GeneID:
Location:

GeneID:4752
TrivialName: PA14_60290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60290
PAO1 Ortholog Locus:
Sequence Length:828
Protein Length:275
Start: 5371711
Stop: 5372538
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP81274.1| (AY273871) PilW [Pseudomonas aeruginosa]
Identities = 271/271 (100%), Positives = 271/271 (100%)
Sequence:
GTGAGAACAAGCATGCTCTTCAGCAAAATGCAGAAAGGCCTATCGATGGTAGAACTGCTCGTGGCACTCGCT
ATAAGCAGCTTCCTGATCCTGGGGATCAGCCAGATCTACATCGACAACAAACGCAACTATCTTTTCCAGCAA
GGCCAGGCCGGCAACCAGGAAAATAGCCGCTTCGTTCTTATGCTGCTGCAGCAACAACTGGATAAGACAGCC
TATCGTCGCCTTCACGACGACAACATGGAGAATGCTTTCAAATCCGCGACATTCAATGGCTGTCGTGCATTT
GTGGCTGGCGAGACTATCGCTGCGGCAACTGCCCTCAAGGCGGGTGAGTACGGTGTCTGCTTGCGCTATCAA
CCCGCCTACAAAGGGGAGCATGATTGCCTCGGTAATGAAATTACCGGAGTTCCGGAAAAGCCCTTCACAAAT
ACTCCCCCTGTCGTCGTTCGCCTGGTCTACCTACCGAGCGCCGGTACCCTGAGTTGCAGTCGTCCCGATATC
GCCCAGTCGAAATCGGGAGAATTGGTCAGTGGTCTCACAGACTTCCGCTTGGAAGCGGGGGTCGGGCCAGCA
GATCGTAGCGAACGCAAAGTATCCAGCTTCGTCGCACTACAGGATGTCGCCGGTCGTCCTATCCGAGCATTG
CGCTTCTCAATCCTGGCAGGCAGCGACAATACAAGCCTGCGCACAGGAGATGATAGCCAGGCACGCGATCGC
TGGATCGTCCTTTATCCCGAGAGCAAAAGCGCCATCGAGGCCGCAGACAAAGGCCAGATTTACCAAATAGCG
CGTGGTAACCAAACCATCAGGAATCTCATGCCATGA
Translation:
MRTSMLFSKMQKGLSMVELLVALAISSFLILGISQIYIDNKRNYLFQQGQAGNQENSRFVLMLLQQQLDKTA
YRRLHDDNMENAFKSATFNGCRAFVAGETIAAATALKAGEYGVCLRYQPAYKGEHDCLGNEITGVPEKPFTN
TPPVVVRLVYLPSAGTLSCSRPDIAQSKSGELVSGLTDFRLEAGVGPADRSERKVSSFVALQDVAGRPIRAL
RFSILAGSDNTSLRTGDDSQARDRWIVLYPESKSAIEAADKGQIYQIARGNQTIRNLMP*
AnnotationID:4757GeneID:4752
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 17:05:59
Gene Name:pilW
Confidence Code:1
GeneProduct:type 4 fimbrial biogenesis protein PilW
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4966
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|7465496|pir||S72643  type 4 fimbrial biogenesis protein pilW PA4552 
[Pseudomonas aeruginosa PAO1]
     Length=274
     Score =  266 bits (680),  Expect = 5e-70
     Identities = 147/273 (53%), Positives = 187/273 (68%), Gaps = 10/273 (3%)






 
Structural Features:
COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular 
trafficking and secretion].
             CD-Length = 318 residues,  98.1% aligned
             Score =  105 bits (264), Expect = 5e-24






   
Genomic Context:
PA14 GeneIDs 5422 to 5476 (Trivial Names PA14_60280 to PA14_60320) replace PAO1 genes 
PA4549 through PA4556 required for type 4 fimbrial biogenesis.  PA14 ORFs corresponding 
to fimT (PA4549), pilV (PA4551), and pilY2 (PA4555) are absent.







   
Comment:


















    ReferenceID:15172




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26645




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31659




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4752_cdd.html


    		




 
URL:

















    ReferenceID:33008




  
Author/Investigator(s):
        Alm RA, Hallinan JP, Watson AA, Mattick JS.





  
Title:
        Fimbrial biogenesis genes of Pseudomonas aeruginosa: pilW and pilX increase the similarity of type 4 fimbriae to the GSP protein-secretion systems and pilY1 encodes a gonococcal PilC homologue.




  
PubMed:
        8899718


MedLine:
        




    
Source:
Mol Microbiol. 1996 Oct;22(1):161-73.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8899718









           
Homologs By Global Alignment 

           

       



     
Gene ID:4752
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
187105
                           gb|AAP81274.1|
                           (AY273871) PilW [Pseudomonas aeruginosa]
                           275
                           98.54
                           98.54
                           4
                           1373.0
     

     
     
7123
                           PA4552_tr
                           translation of PA4552
                           284
                           53.16
                           67.25
                           19
                           688.0
     

     
     
187106
                           gb|AAG07940.1|AE004869_4
                           (AE004869) type 4 fimbrial biogenesis protein PilW [Pseudomonas aeruginosa PAO1]
                           284
                           53.16
                           67.25
                           19
                           688.0
     

     
     
187107
                           gb|AAA93500.1|
                           (L76605) pilW gene product [Pseudomonas aeruginosa]
                           284
                           53.16
                           67.25
                           19
                           688.0
     

     






      

          
GC ORFID: 47754How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4552Glimmer Score: 

          
Start: 4635390Stop: 4636217

          
Length: 828


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4552 translation of PA4552Homolog Bit Score 266.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGAGAACAAGCATGCTCTTCAGCAAAATGCAGAAAGGCCTATCGATGGTAGAACTGCTCGTGGCACTCGCT 
ATAAGCAGCTTCCTGATCCTGGGGATCAGCCAGATCTACATCGACAACAAACGCAACTATCTTTTCCAGCAA 
GGCCAGGCCGGCAACCAGGAAAATAGCCGCTTCGTTCTTATGCTGCTGCAGCAACAACTGGATAAGACAGCC 
TATCGTCGCCTTCACGACGACAACATGGAGAATGCTTTCAAATCCGCGACATTCAATGGCTGTCGTGCATTT 
GTGGCTGGCGAGACTATCGCTGCGGCAACTGCCCTCAAGGCGGGTGAGTACGGTGTCTGCTTGCGCTATCAA 
CCCGCCTACAAAGGGGAGCATGATTGCCTCGGTAATGAAATTACCGGAGTTCCGGAAAAGCCCTTCACAAAT 
ACTCCCCCTGTCGTCGTTCGCCTGGTCTACCTACCGAGCGCCGGTACCCTGAGTTGCAGTCGTCCCGATATC 
GCCCAGTCGAAATCGGGAGAATTGGTCAGTGGTCTCACAGACTTCCGCTTGGAAGCGGGGGTCGGGCCAGCA 
GATCGTAGCGAACGCAAAGTATCCAGCTTCGTCGCACTACAGGATGTCGCCGGTCGTCCTATCCGAGCATTG 
CGCTTCTCAATCCTGGCAGGCAGCGACAATACAAGCCTGCGCACAGGAGATGATAGCCAGGCACGCGATCGC 
TGGATCGTCCTTTATCCCGAGAGCAAAAGCGCCATCGAGGCCGCAGACAAAGGCCAGATTTACCAAATAGCG 
CGTGGTAACCAAACCATCAGGAATCTCATGCCATGA