ViewGene
Locus Name:
GeneID:
Location:

GeneID:4751
TrivialName: PA14_10950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10950
PAO1 Ortholog Locus:PA4093
Sequence Length:417
Protein Length:138
Start: 946961
Stop: 947377
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07480.1|AE004825_9 (AE004825) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/138 (99%), Positives = 137/138 (99%)
Sequence:
GTGACCGACAAGAAAGAGCAGATCGCCCGTTTCATCCAGCACGAATTTCCCCAGACCCGGGTCGTGGTCGAA
GCCGTCGGCGAGCGTAGCGCCACGGTCTGGCAGGCGGTCGACGCCAGCGACCTGCGCCCCGGCGGCACGGTC
TCCGGGCCGACCCTGATGGCCATCGCCGATGTCGCGCTGTACGTGGCGGTACTGGGCGAGATCGGCATCGTC
CCGCTGGCGGTGACCACCAGCCTGACCATCAACTTCCTGCGGCGTCCGGCGGCGGACCGCCGGGTGGTCGCC
GAGTGCCGCCTGATGAAGGTCGGCAAGACCCTGGCGATGGGCGAGGTCTCGCTGTTCTCCGAAGGCGACGCG
GAACCGGTCGCCCATGTGGTCGGCACCTACTCGATCCCACCGGCGCACCGCCGCTGA
Translation:
MTDKKEQIARFIQHEFPQTRVVVEAVGERSATVWQAVDASDLRPGGTVSGPTLMAIADVALYVAVLGEIGIV
PLAVTTSLTINFLRRPAADRRVVAECRLMKVGKTLAMGEVSLFSEGDAEPVAHVVGTYSIPPAHRR*
AnnotationID:4756GeneID:4751
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 10:10:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4093
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2050
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC45823.1| (AL591786) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
           meliloti]
          Length = 143

 Score =  106 bits (264), Expect = 3e-23
 Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 6/134 (4%)








 
Structural Features:
COG2050, PaaI, Uncharacterized protein, possibly involved in 
aromatic compounds catabolism 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 141 residues,  97.9% aligned
Score = 82.0 bits (202), Expect = 2e-17
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 4/139 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:15170




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26643




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36838




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4751_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4751
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7122
                           PA4093_tr
                           translation of PA4093
                           138
                           99.27
                           99.27
                           0
                           681.0
     

     
     
187099
                           gb|AAG07480.1|AE004825_9
                           (AE004825) hypothetical protein PA4093 [Pseudomonas aeruginosa PAO1]
                           138
                           98.55
                           99.27
                           0
                           678.0
     

     
     
187102
                           gb|AAL52348.1|
                           (AE009556) Hypothetical Protein [Brucella melitensis 16M]
                           140
                           48.57
                           60.00
                           8
                           290.0
     

     
     
187101
                           emb|CAE28208.1|
                           (BX572601) Phenylacetic acid degradation-related protein:Thioesterase superfamily [Rhodopseudomonas palustris CGA009]
                           149
                           45.63
                           60.40
                           18
                           304.0
     

     
     
187103
                           gb|AAN29721.1|AE014384_1
                           (AE014384) conserved hypothetical protein [Brucella suis 1330]
                           154
                           44.15
                           55.84
                           22
                           286.0
     

     






      

          
GC ORFID: 47753How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4093Glimmer Score: 

          
Start: 4006976Stop: 4006560

          
Length: 417


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4093 translation of PA4093Homolog Bit Score 266.0

          
Other Homologs:  t_PA4093 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCGACAAGAAAGAGCAGATCGCCCGTTTCATCCAGCACGAATTTCCCCAGACCCGGGTCGTGGTCGAA 
GCCGTCGGCGAGCGTAGCGCCACGGTCTGGCAGGCGGTCGACGCCAGCGACCTGCGCCCCGGCGGCACGGTC 
TCCGGGCCGACCCTGATGGCCATCGCCGATGTCGCGCTGTACGTGGCGGTACTGGGCGAGATCGGCATCGTC 
CCGCTGGCGGTGACCACCAGCCTGACCATCAACTTCCTGCGGCGTCCGGCGGCGGACCGCCGGGTGGTCGCC 
GAGTGCCGCCTGATGAAGGTCGGCAAGACCCTGGCGATGGGCGAGGTCTCGCTGTTCTCCGAAGGCGACGCG 
GAACCGGTCGCCCATGTGGTCGGCACCTACTCGATCCCACCGGCGCACCGCCGCTGA