ViewGene
Locus Name:
GeneID:
Location:

GeneID:4750
TrivialName: PA14_12550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12550
PAO1 Ortholog Locus:PA3967
Sequence Length:393
Protein Length:130
Start: 1079006
Stop: 1078614
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07354.1|AE004814_9 (AE004814) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/130 (100%), Positives = 130/130 (100%)
Sequence:
ATGAACGCCGCCGACCGCGTCATGCAGAGTTATGGACGCTGCTGTGCCAGCACCGGATTCTTCGATGATTTC
TACCGGCATTTCCTTGCCAGTTCCCCGCAGATTCGCGCCAAGTTCGCCACCACCGACATGACTGCGCAGAAA
CACCTGCTGCGTGCCGGGATCATGAACCTGGTGATGTACGCCCGCGGCATGTCCGACAGCAAGCTGCGCGCA
CTCGGCGCCAGCCATTCGCGCGCCGCGCTGGATATCCGCCCGGAACTCTACGACCTGTGGCTGGACGCCCTG
CTGATGGCGGTCGCCGAGCACGACCGCGACTGCGACGCCGAGACCCGCGACGCCTGGCGCGACGTGATGGGT
CGCGGCATCGCCGTGATCAAGTCGTACTACTGA
Translation:
MNAADRVMQSYGRCCASTGFFDDFYRHFLASSPQIRAKFATTDMTAQKHLLRAGIMNLVMYARGMSDSKLRA
LGASHSRAALDIRPELYDLWLDALLMAVAEHDRDCDAETRDAWRDVMGRGIAVIKSYY*
AnnotationID:4755GeneID:4750
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 18:06:53
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3967
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9501




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4750
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7121
                           PA3967_tr
                           translation of PA3967
                           130
                           99.99
                           99.99
                           0
                           679.0
     

     
     
187098
                           gb|AAG07354.1|AE004814_9
                           (AE004814) hypothetical protein PA3967 [Pseudomonas aeruginosa PAO1]
                           130
                           99.99
                           99.99
                           0
                           679.0
     

     






      

          
GC ORFID: 47752How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3967Glimmer Score: 

          
Start: 3874932Stop: 3875324

          
Length: 393


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3967 translation of PA3967Homolog Bit Score 266.0

          
Other Homologs:  t_PA3967 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCGCCGACCGCGTCATGCAGAGTTATGGACGCTGCTGTGCCAGCACCGGATTCTTCGATGATTTC 
TACCGGCATTTCCTTGCCAGTTCCCCGCAGATTCGCGCCAAGTTCGCCACCACCGACATGACTGCGCAGAAA 
CACCTGCTGCGTGCCGGGATCATGAACCTGGTGATGTACGCCCGCGGCATGTCCGACAGCAAGCTGCGCGCA 
CTCGGCGCCAGCCATTCGCGCGCCGCGCTGGATATCCGCCCGGAACTCTACGACCTGTGGCTGGACGCCCTG 
CTGATGGCGGTCGCCGAGCACGACCGCGACTGCGACGCCGAGACCCGCGACGCCTGGCGCGACGTGATGGGT 
CGCGGCATCGCCGTGATCAAGTCGTACTACTGA