ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4749

TrivialName: PA14_47110

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_47110

PAO1 Ortholog Locus: PA1325

Sequence Length: 408

Protein Length: 135

Start: 4197970

Stop: 4197563

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04714.1|AE004562_1 (AE004562) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 134/135 (99%), Positives = 135/135 (100%)

Sequence:

ATGCAGCACCAGACCCTCCAGAACCTCGTTGGCCGGGCCGACGCCCTGATCAATGCCGGGCAGTTCGATGCC
CTGATGGATTTCTATTGCGACGACGCCACCCTGGTGGTCAAGCCGGGCCTCAACGCCTGCGGCAAGGCGCAG
ATCCGCCAGGCGTTCGACGCCATCGCCCGGCACTTCGAGCACAGCCTGCGAGTGCGCCAGCACGACCTGCGG
GTGATCGAGGCGGGAGATACGGCGCTGGTCATGGCCGAGGCGGTGATCGAGTCGAAGGCCGGACGCCTGCAA
CGTCGGGCCACCTACGTGTTCCGCCAGGAGGCCGATGGCCGGTGGCGCTGCGCGGTGGACAACTCCTACGGC
ACCGACCTGCTGGCCTCGGTGGCGGCGAGCGCGGAGGCCAGCCGATGA

Translation:

MQHQTLQNLVGRADALINAGQFDALMDFYCDDATLVVKPGLNACGKAQIRQAFDAIARHFEHSLRVRQHDLR
VIEAGDTALVMAEAVIESKAGRLQRRATYVFRQEADGRWRCAVDNSYGTDLLASVAASAEASR*

AnnotationID:4754 GeneID:4749

AnnotatorUID: diggins

Modification Date/Time: 2005-05-26 14:02:48

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: yybH

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4319

Secondary Functional Category(ies): putative enzyme

EC Number:

Status: ACTIVE

Pathway:

Homology:

>emb|CAB16101.1| (Z99124) yybH [Bacillus subtilis subsp. subtilis str. 168]
          Length = 129

 Score =  115 bits (288), Expect = 4e-26
 Identities = 55/125 (44%), Positives = 83/125 (66%), Gaps = 4/125 (3%)

Structural Features:

COG4319, COG4319, Ketosteroid isomerase homolog
CD-Length = 137 residues,  99.3% aligned
Score =  118 bits (298), Expect = 2e-28
Identities = 51/136 (37%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Genomic Context:

Comment:

ReferenceID:9499

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:26639

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37443

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4749_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4749

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

7120 PA1325_tr translation of PA1325 135 99.25 99.99 0 681.0

187094 gb|AAG04714.1|AE004562_1 (AE004562) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 135 99.25 99.99 0 681.0

187095 emb|CAB16101.1| (Z99124) yybH [Bacillus subtilis subsp. subtilis str. 168] 139 39.56 59.71 14 289.0

187096 dbj|BAA05195.1| (D26185) unknown [Bacillus subtilis] 139 39.56 59.71 14 289.0

187097 emb|CAB40965.1| (AJ011913) ORFX [Lactococcus lactis] 152 37.50 55.26 31 266.0

GC ORFID: `47751`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1325`	Glimmer Score:
Start: `755939`	Stop: `756346`
Length: `408`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1325 translation of PA1325`	Homolog Bit Score `266.0`
Other Homologs: `t_PA1325 (ORF: GLIMMER)`
GC ORF Sequence
`ATGCAGCACCAGACCCTCCAGAACCTCGTTGGCCGGGCCGACGCCCTGATCAATGCCGGGCAGTTCGATGCC CTGATGGATTTCTATTGCGACGACGCCACCCTGGTGGTCAAGCCGGGCCTCAACGCCTGCGGCAAGGCGCAG ATCCGCCAGGCGTTCGACGCCATCGCCCGGCACTTCGAGCACAGCCTGCGAGTGCGCCAGCACGACCTGCGG GTGATCGAGGCGGGAGATACGGCGCTGGTCATGGCCGAGGCGGTGATCGAGTCGAAGGCCGGACGCCTGCAA CGTCGGGCCACCTACGTGTTCCGCCAGGAGGCCGATGGCCGGTGGCGCTGCGCGGTGGACAACTCCTACGGC ACCGACCTGCTGGCCTCGGTGGCGGCGAGCGCGGAGGCCAGCCGATGA`