ViewGene
Locus Name:
GeneID:
Location:

GeneID:4748
TrivialName: PA14_53030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53030
PAO1 Ortholog Locus:PA0868
Sequence Length:414
Protein Length:137
Start: 4702325
Stop: 4701912
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04257.1|AE004521_8 (AE004521) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/137 (100%), Positives = 137/137 (100%)
Sequence:
ATGCTGATCATCTCCAATGCCGTCCACCTGCCCGACCATGAGATCGAGCTGAATGCCATTCGCGCCCAGGGC
GCCGGCGGGCAGAACGTCAACAAGGTCTCCAGCGCGGTGCACCTGCGCTTCGACATCCAGGCCTCGTCGTTG
CCGCCGTTCTACAAGGAGCGTCTGCTGGCACTGAACGACCAGCGCATCAGCGGCGACGGCGTGGTGGTGATC
AAGGCCCAGCAGTACCGGACCCAGGAGCAGAACCGCGAGGATGCCCTGGAGCGCCTGGCGGAGTTGATCCGC
AGCGTGGCCAAGGTGCAGAAGGCGCGGCGCCCGACCAAGCCTACGCGCGGCTCGCAGAAGCGCCGGCTGGAC
GGCAAGGCCAAGCGCGGCGCGGTGAAGGCCGGGCGCGGCAAGGTGGATTTCTGA
Translation:
MLIISNAVHLPDHEIELNAIRAQGAGGQNVNKVSSAVHLRFDIQASSLPPFYKERLLALNDQRISGDGVVVI
KAQQYRTQEQNREDALERLAELIRSVAKVQKARRPTKPTRGSQKRRLDGKAKRGAVKAGRGKVDF*
AnnotationID:4753GeneID:4748
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 11:11:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0868, yaeJ 
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1186, pfam00472
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1186, PrfB, Protein chain release factor B.  Score: 126, 1e-30 (56.1% aligned)
pfam00472, RF-1, Peptidyl-tRNA hydrolase domain. Score: 81.4, 6e-17 (100% aligned)







   
Genomic Context:






   
Comment:


















    ReferenceID:9497




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26637




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4748
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7119
                           PA0868_tr
                           translation of PA0868
                           137
                           99.99
                           99.99
                           0
                           680.0
     

     
     
187052
                           gb|AAG04257.1|AE004521_8
                           (AE004521) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           137
                           99.99
                           99.99
                           0
                           680.0
     

     
     
187053
                           gb|AAO55337.1|
                           (AE016862) peptidyl-tRNA hydrolase domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           137
                           79.56
                           89.78
                           0
                           555.0
     

     
     
187054
                           gb|AAN68554.1|AE016487_8
                           (AE016785) peptidyl-tRNA hydrolase domain protein [Pseudomonas putida KT2440]
                           137
                           77.37
                           83.94
                           0
                           523.0
     

     
     
187056
                           dbj|BAD01885.1|
                           (AP004310) slr5115 [Synechocystis sp. PCC 6803]
                           137
                           66.42
                           79.56
                           0
                           440.0
     

     






      

          
GC ORFID: 47750How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0868Glimmer Score: 

          
Start: 251582Stop: 251995

          
Length: 414


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0868 translation of PA0868Homolog Bit Score 266.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7801 (ORF: BLASTX 217.0), t_PA0868 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGATCATCTCCAATGCCGTCCACCTGCCCGACCATGAGATCGAGCTGAATGCCATTCGCGCCCAGGGC 
GCCGGCGGGCAGAACGTCAACAAGGTCTCCAGCGCGGTGCACCTGCGCTTCGACATCCAGGCCTCGTCGTTG 
CCGCCGTTCTACAAGGAGCGTCTGCTGGCACTGAACGACCAGCGCATCAGCGGCGACGGCGTGGTGGTGATC 
AAGGCCCAGCAGTACCGGACCCAGGAGCAGAACCGCGAGGATGCCCTGGAGCGCCTGGCGGAGTTGATCCGC 
AGCGTGGCCAAGGTGCAGAAGGCGCGGCGCCCGACCAAGCCTACGCGCGGCTCGCAGAAGCGCCGGCTGGAC 
GGCAAGGCCAAGCGCGGCGCGGTGAAGGCCGGGCGCGGCAAGGTGGATTTCTGA