ViewGene

Locus Name:
GeneID:
Location:

GeneID:4747
TrivialName: PA14_55340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55340
PAO1 Ortholog Locus:PA0694
Sequence Length:420
Protein Length:139
Start: 4913224
Stop: 4912805
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04083.1|AE004505_4 (AE004505) transport protein ExbD [Pseudomonas aeruginosa PAO1]
Identities = 139/139 (100%), Positives = 139/139 (100%)
Sequence:
ATGGCTTCCGTGAACAGCAGCCACGACGATGACGACGACGGCGCCGTCGACAGCATCAACATCACCCCGCTG
GTGGACGTGCTGATGGTGGTGCTGGTGATGTTCATCCTCACCGCCACCGCCCAGGTCGCCGGGATCCAGATC
AACCTGCCGAAGGCCAGTGCCACCGTGGCGCTGTCGCAGCCCAAGACCAAGGCGATCTCGGTGAACGACGCC
GGCCAGGTGTTCCTCGACGCCTACCCGGTGACCCTGCCCGAGCTGGAGGACCGCCTGCGTACGGAGAAGGCC
CTCAACCCCGACTTCCCGGTAGTGGTCCGCGGCGACGCCACGGTGCAGTACCAGAAGGTCATCGAGGTCCTC
GACCTGCTGCGCCGCCTGGAGCTGTCCCAGGTCGGCCTGGTCACCGGCAAACCGACCTGA
Translation:
MASVNSSHDDDDDGAVDSINITPLVDVLMVVLVMFILTATAQVAGIQINLPKASATVALSQPKTKAISVNDA
GQVFLDAYPVTLPELEDRLRTEKALNPDFPVVVRGDATVQYQKVIEVLDLLRRLELSQVGLVTGKPT*
AnnotationID:4752GeneID:4747
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 16:04:04
Gene Name:exbD2 
Confidence Code:2
GeneProduct:transport protein ExbD
Cell Localization:()
Synonyms:PA0694
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
  
Structural Features:
COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking 
and secretion]
   CD-Length = 137 residues,  91.2% aligned
   Score = 96.8 bits (241), Expect = 2e-21
Genomic Context:
Comment:
ReferenceID:9495
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26635
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4747

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7118 PA0694_tr translation of PA0694 139 99.99 99.99 0 680.0
187050 gb|AAG04083.1|AE004505_4 (AE004505) transport protein ExbD [Pseudomonas aeruginosa PAO1] 139 99.99 99.99 0 680.0
187051 emb|CAE26794.1| (BX572597) transport protein ExbD [Rhodopseudomonas palustris CGA009] 141 53.90 68.79 9 363.0
GC ORFID: 47749How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0694Glimmer Score:
Start: 40683Stop: 41102
Length: 420
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0694 translation of PA0694Homolog Bit Score 266.0
Other Homologs: t_PA0694 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTTCCGTGAACAGCAGCCACGACGATGACGACGACGGCGCCGTCGACAGCATCAACATCACCCCGCTG
GTGGACGTGCTGATGGTGGTGCTGGTGATGTTCATCCTCACCGCCACCGCCCAGGTCGCCGGGATCCAGATC
AACCTGCCGAAGGCCAGTGCCACCGTGGCGCTGTCGCAGCCCAAGACCAAGGCGATCTCGGTGAACGACGCC
GGCCAGGTGTTCCTCGACGCCTACCCGGTGACCCTGCCCGAGCTGGAGGACCGCCTGCGTACGGAGAAGGCC
CTCAACCCCGACTTCCCGGTAGTGGTCCGCGGCGACGCCACGGTGCAGTACCAGAAGGTCATCGAGGTCCTC
GACCTGCTGCGCCGCCTGGAGCTGTCCCAGGTCGGCCTGGTCACCGGCAAACCGACCTGA