ViewGene
Locus Name:
GeneID:
Location:

GeneID:4746
TrivialName: PA14_11920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11920
PAO1 Ortholog Locus:PA4014
Sequence Length:411
Protein Length:136
Start: 1031915
Stop: 1032325
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07401.1|AE004818_7 (AE004818) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 136/136 (100%), Positives = 136/136 (100%)
Sequence:
ATGTCCCGGCGGGCTGGGCATAATGGTCGGCCCTTGCTGGAGGTGCCCATGTTGCTTCGTGGTCTGACCTGG
CTGGTGCTGTTCCAGTTGCTCGGCACAGGTCTGAACGTTCTGTTGTTGCCCATGCTGCCCGGTCCGATCATC
GGCCTGGTGCTGCTGTTCGGTTATTTCCTGGCGCGTGGCGAGGTCGGCAAGCCGGTCAACGAGGCGGCCGGC
TCGTTGCTGCGCTACCTGCCGCTGCTGCTGGTGCCGGCGGCGGTCGGGGTGATGGCCTATGCGCGGGAGATC
GCCGCCGACTTCTGGGCCATCGTCGGCGCGCTGGTACTGTCGCTGCTGCTGTCGTTCCTGTTCGCCGGCTGG
ATGATGCAGAAGCTCATCGATCGCCAGCAACGTCGCCGGGAGGAGTCCTGA
Translation:
MSRRAGHNGRPLLEVPMLLRGLTWLVLFQLLGTGLNVLLLPMLPGPIIGLVLLFGYFLARGEVGKPVNEAAG
SLLRYLPLLLVPAAVGVMAYAREIAADFWAIVGALVLSLLLSFLFAGWMMQKLIDRQQRRREES*
AnnotationID:4751GeneID:4746
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 12:12:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4014
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1380
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11095 COG1380, COG1380, Putative effector of murein hydrolase LrgA
[General function prediction only]
Length = 128
Score = 95.6 bits (238), Expect = 3e-21
Identities = 50/125 (40%), Positives = 67/125 (53%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9493




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26633




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4746
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7117
                           PA4014_tr
                           translation of PA4014
                           136
                           99.99
                           99.99
                           0
                           683.0
     

     
     
187047
                           gb|AAG07401.1|AE004818_7
                           (AE004818) hypothetical protein PA4014 [Pseudomonas aeruginosa PAO1]
                           136
                           99.99
                           99.99
                           0
                           683.0
     

     
     
187048
                           gb|AAN70385.1|AE016680_5
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           136
                           62.50
                           75.00
                           14
                           435.0
     

     
     
187049
                           gb|AAO54277.1|
                           (AE016858) LrgA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           136
                           62.50
                           69.85
                           16
                           427.0
     

     






      

          
GC ORFID: 47748How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4014Glimmer Score: 

          
Start: 3922023Stop: 3921613

          
Length: 411


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4014 translation of PA4014Homolog Bit Score 267.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3476 (ORF: BLASTX 167.0), t_PA4014 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGGCGGGCTGGGCATAATGGTCGGCCCTTGCTGGAGGTGCCCATGTTGCTTCGTGGTCTGACCTGG 
CTGGTGCTGTTCCAGTTGCTCGGCACAGGTCTGAACGTTCTGTTGTTGCCCATGCTGCCCGGTCCGATCATC 
GGCCTGGTGCTGCTGTTCGGTTATTTCCTGGCGCGTGGCGAGGTCGGCAAGCCGGTCAACGAGGCGGCCGGC 
TCGTTGCTGCGCTACCTGCCGCTGCTGCTGGTGCCGGCGGCGGTCGGGGTGATGGCCTATGCGCGGGAGATC 
GCCGCCGACTTCTGGGCCATCGTCGGCGCGCTGGTACTGTCGCTGCTGCTGTCGTTCCTGTTCGCCGGCTGG 
ATGATGCAGAAGCTCATCGATCGCCAGCAACGTCGCCGGGAGGAGTCCTGA