ViewGene
Locus Name:
GeneID:
Location:

GeneID:4745
TrivialName: PA14_46720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46720
PAO1 Ortholog Locus:PA1358
Sequence Length:399
Protein Length:132
Start: 4163665
Stop: 4164063
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04747.1|AE004565_6 (AE004565) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/132 (98%), Positives = 130/132 (98%)
Sequence:
ATGAGCACACGCGTACGCCCCTTCCTGATGTTCCAGGGGGTCCAGGCCGAGGCGGCCATGAACTTCTACCTG
TCGCTGTTCGACGACGCCGAGATCCTCCAGATCCAGCGCTACGGCGCCGAGGGGCCGGGCCCGGAGGGCTCG
GTGCTGAAGGCGCTGTTCCGCCTCGGCGACCAGAGCGTGCATTGCATCGACAGCCATGTGCGGCACGCCTTC
GATTTCACCCCGGCGTTCTCCTTCTTCGTCGACTGCGAGAGCAACGCGCAGATCGAGCGCCTGGCCGAAGCC
CTGGGCGACGGCGGCAAGGCCCTGATGCCGCTCGGCGACTACGGCTTCAGCCAGCGTTTCGCCTGGCTGGCC
GACCGCTTCGGGGTGTCCTGGCAGCTCAACCTGGCCTGA
Translation:
MSTRVRPFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRLGDQSVHCIDSHVRHAF
DFTPAFSFFVDCESNAQIERLAEALGDGGKALMPLGDYGFSQRFAWLADRFGVSWQLNLA*
AnnotationID:4750GeneID:4745
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1358
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP09394.1| (AE017005) PhnB protein [Bacillus cereus ATCC 14579]
          Length = 135

 Score =  144 bits (363), Expect = 9e-35
 Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 1/129 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9491




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26631




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37405




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4745_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4745
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7116
                           PA1358_tr
                           translation of PA1358
                           132
                           98.48
                           98.48
                           0
                           682.0
     

     
     
187043
                           gb|AAG04747.1|AE004565_6
                           (AE004565) hypothetical protein PA1358 [Pseudomonas aeruginosa PAO1]
                           132
                           98.48
                           98.48
                           0
                           682.0
     

     
     
187044
                           gb|AAP09394.1|
                           (AE017005) PhnB protein [Bacillus cereus ATCC 14579]
                           136
                           50.73
                           64.70
                           5
                           364.0
     

     
     
187045
                           gb|AAP26345.1|
                           (AE017031) conserved hypothetical protein [Bacillus anthracis str. Ames]
                           136
                           50.00
                           64.70
                           5
                           357.0
     

     
     
187046
                           dbj|BAC12359.1|
                           (AP004594) hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
                           133
                           41.35
                           66.16
                           2
                           312.0
     

     






      

          
GC ORFID: 47747How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1358Glimmer Score: 

          
Start: 790244Stop: 789846

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1358 translation of PA1358Homolog Bit Score 267.0

          
Other Homologs:  t_PA1358 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACACGCGTACGCCCCTTCCTGATGTTCCAGGGGGTCCAGGCCGAGGCGGCCATGAACTTCTACCTG 
TCGCTGTTCGACGACGCCGAGATCCTCCAGATCCAGCGCTACGGCGCCGAGGGGCCGGGCCCGGAGGGCTCG 
GTGCTGAAGGCGCTGTTCCGCCTCGGCGACCAGAGCGTGCATTGCATCGACAGCCATGTGCGGCACGCCTTC 
GATTTCACCCCGGCGTTCTCCTTCTTCGTCGACTGCGAGAGCAACGCGCAGATCGAGCGCCTGGCCGAAGCC 
CTGGGCGACGGCGGCAAGGCCCTGATGCCGCTCGGCGACTACGGCTTCAGCCAGCGTTTCGCCTGGCTGGCC 
GACCGCTTCGGGGTGTCCTGGCAGCTCAACCTGGCCTGA