ViewGene
Locus Name:
GeneID:
Location:

GeneID:4744
TrivialName: PA14_71880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71880
PAO1 Ortholog Locus:PA5444
Sequence Length:429
Protein Length:142
Start: 6406232
Stop: 6406660
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08829.1|AE004957_4 (AE004957) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/142 (97%), Positives = 139/142 (97%)
Sequence:
ATGCTGGCATCCTGGGCCTTCTGGGCACTGCTTTCGGCGCTGTTCGCCGCGCTGACCGCGATCTTCGCCAAG
ATCGGCCTCGACCGGGTCGATTCGGACTTCGCCACCTTCATCCGCACCCTGGTGATCCTCGTCACCCTCGGC
GGCATCCTCGCGGTCCTGGGCAAGTTCCAGGCCCCGGGCAGCATCCCGCCGCGCAGCTGGCTGTTCCTGGTG
CTCTCCGGGCTGGCCACCGGTGCTTCCTGGATCTGCTATTTCCGCGCCCTCAAGCTCGGCCCGGCGTCGCTG
GTGGCGCCGCTGGACAAGTTCAGCGTGGTGCTGGTGGCACTGCTCGGCGTGGCCCTCCTCGGCGAACGCCTG
GACCTGCGCCAATGGCTCGGCGTAGGCCTGGTGACAGCGGGCGTGGTGGTCCTGGCAATCCGCCCATAA
Translation:
MLASWAFWALLSALFAALTAIFAKIGLDRVDSDFATFIRTLVILVTLGGILAVLGKFQAPGSIPPRSWLFLV
LSGLATGASWICYFRALKLGPASLVAPLDKFSVVLVALLGVALLGERLDLRQWLGVGLVTAGVVVLAIRP*
AnnotationID:4749GeneID:4744
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 17:05:44
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5444
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2510
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2510, Predicted membrane protein
CD-Length = 140 residues, 100.0% aligned
Score =  140 bits (355), Expect = 6e-35
Identities = 82/140 (58%), Positives = 102/140 (72%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9489




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26629




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34667




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4744_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4744
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7115
                           PA5444_tr
                           translation of PA5444
                           142
                           97.88
                           97.88
                           0
                           684.0
     

     
     
187025
                           gb|AAG08829.1|AE004957_4
                           (AE004957) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           142
                           97.88
                           97.88
                           0
                           684.0
     

     
     
187031
                           gb|AAN30222.1|AE014428_7
                           (AE014428) membrane protein, putative [Brucella suis 1330]
                           142
                           62.67
                           78.16
                           0
                           460.0
     

     
     
187030
                           gb|AAL51878.1|
                           (AE009511) TRANSPORTER, DME FAMILY [Brucella melitensis 16M]
                           143
                           62.23
                           77.62
                           1
                           460.0
     

     
     
187028
                           gb|AAL44115.1|
                           (AE009259) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           145
                           62.06
                           75.17
                           3
                           461.0
     

     






      

          
GC ORFID: 47746How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5444Glimmer Score: 

          
Start: 5669921Stop: 5670349

          
Length: 429


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5444 translation of PA5444Homolog Bit Score 268.0

          
Other Homologs:  t_PA5444 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGCATCCTGGGCCTTCTGGGCACTGCTTTCGGCGCTGTTCGCCGCGCTGACCGCGATCTTCGCCAAG 
ATCGGCCTCGACCGGGTCGATTCGGACTTCGCCACCTTCATCCGCACCCTGGTGATCCTCGTCACCCTCGGC 
GGCATCCTCGCGGTCCTGGGCAAGTTCCAGGCCCCGGGCAGCATCCCGCCGCGCAGCTGGCTGTTCCTGGTG 
CTCTCCGGGCTGGCCACCGGTGCTTCCTGGATCTGCTATTTCCGCGCCCTCAAGCTCGGCCCGGCGTCGCTG 
GTGGCGCCGCTGGACAAGTTCAGCGTGGTGCTGGTGGCACTGCTCGGCGTGGCCCTCCTCGGCGAACGCCTG 
GACCTGCGCCAATGGCTCGGCGTAGGCCTGGTGACAGCGGGCGTGGTGGTCCTGGCAATCCGCCCATAA