ViewGene
Locus Name:
GeneID:
Location:

GeneID:4743
TrivialName: PA14_22700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22700
PAO1 Ortholog Locus:PA3209
Sequence Length:372
Protein Length:123
Start: 1975171
Stop: 1975542
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06597.1|AE004744_12 (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 123/123 (100%), Positives = 123/123 (100%)
Sequence:
ATGTCCACTGACAATCCGTGTCTTACCTGCGGCGCCTGCTGTGCGCATTTTCGTGTGTCTTTCTATTGGGGC
GAGTGCCGTTCCGCAGGCGGCGTCGTACCCGACGAACTGACCGTCCGCATCAGCCCGCAGATGGTCGCCATG
AGCGGTACCGAGAACAAGCCGGCGCGCTGCGTCGGGCTGCTCGGCGAGGTCGGTTGCGGCGTTCGTTGCACC
GTCTACGAGCAGCGCTCGAGTACCTGCCGCGAGTTCGAGGCGGCCTGGGCCAACGGCCAGCCCAACCCGGCC
TGCGATGCCGCGCGCGCCGCCTACGGCCTGCCACCGCTGACCCCGCCGCTGCAGCCGCACCTGGCGCCGGGA
CGGGTCGCCTGA
Translation:
MSTDNPCLTCGACCAHFRVSFYWGECRSAGGVVPDELTVRISPQMVAMSGTENKPARCVGLLGEVGCGVRCT
VYEQRSSTCREFEAAWANGQPNPACDAARAAYGLPPLTPPLQPHLAPGRVA*
AnnotationID:4748GeneID:4743
AnnotatorUID: diggins
Modification Date/Time: 2005-09-18 16:04:20
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin
Cell Localization:()
Synonyms:ykgJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0727
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC73391.1| (AE000136) putative ferredoxin [Escherichia coli K12]
          Length = 109

 Score =  132 bits (333), Expect = 3e-31
 Identities = 63/109 (57%), Positives = 71/109 (65%)

>gb|AAL20651.1| (AE008777) putative ferredoxin [Salmonella typhimurium LT2]
          Length = 134

 Score =  127 bits (319), Expect = 1e-29
 Identities = 59/109 (54%), Positives = 70/109 (64%)






 
Structural Features:
COG0727, Predicted Fe-S-cluster oxidoreductase
CD-Length = 132 residues,  92.4% aligned
Score = 73.5 bits (179), Expect = 7e-15
Identities = 28/125 (22%), Positives = 34/125 (27%), Gaps = 5/125 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9487




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26627




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32336




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4743_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4743
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7114
                           PA3209_tr
                           translation of PA3209
                           123
                           99.99
                           99.99
                           0
                           684.0
     

     
     
187015
                           gb|AAG06597.1|AE004744_12
                           (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           123
                           99.99
                           99.99
                           0
                           684.0
     

     
     
187016
                           gb|AAN66444.1|AE016274_1
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           127
                           63.77
                           74.01
                           4
                           437.0
     

     
     
187020
                           dbj|BAB33741.1|
                           (AP002551) putative ferredoxin [Escherichia coli O157:H7]
                           123
                           51.21
                           57.72
                           14
                           333.0
     

     
     
187019
                           gb|AAB18017.1|
                           (U73857) similar to putative ferredoxin of A. calcoaceticus [Escherichia coli]
                           123
                           51.21
                           57.72
                           14
                           333.0
     

     






      

          
GC ORFID: 47745How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3209Glimmer Score: 

          
Start: 2978760Stop: 2978389

          
Length: 372


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3209 translation of PA3209Homolog Bit Score 268.0

          
Other Homologs:  t_PA3209 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCACTGACAATCCGTGTCTTACCTGCGGCGCCTGCTGTGCGCATTTTCGTGTGTCTTTCTATTGGGGC 
GAGTGCCGTTCCGCAGGCGGCGTCGTACCCGACGAACTGACCGTCCGCATCAGCCCGCAGATGGTCGCCATG 
AGCGGTACCGAGAACAAGCCGGCGCGCTGCGTCGGGCTGCTCGGCGAGGTCGGTTGCGGCGTTCGTTGCACC 
GTCTACGAGCAGCGCTCGAGTACCTGCCGCGAGTTCGAGGCGGCCTGGGCCAACGGCCAGCCCAACCCGGCC 
TGCGATGCCGCGCGCGCCGCCTACGGCCTGCCACCGCTGACCCCGCCGCTGCAGCCGCACCTGGCGCCGGGA 
CGGGTCGCCTGA