ViewGene
Locus Name:
GeneID:
Location:

GeneID:4742
TrivialName: PA14_34020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34020
PAO1 Ortholog Locus:PA2368
Sequence Length:426
Protein Length:141
Start: 3027073
Stop: 3026648
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05756.1|AE004663_2 (AE004663) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/141 (97%), Positives = 138/141 (97%)
Sequence:
ATGTCCGGAGCCCTGCCGCCGCTGTTCGAGCGCCTCAGCGCCGAGGCCGACGAACGTCCCGCGTTCGACGAC
CGGGCGCTGGCCGAGTCGGTCCGCGGCGAGCTGCTGCGCCTGCTCAACACACGGCGCCCGGCGCATGCGCGC
AGCGGCATCCTCGCCTACGGGCTCGCCGACTGGACCGCCGTGCAACGCCTGCGCGCCGAGGACCGGCGCCAG
CTGGCACGCGAGGTGCGGGCGGCGGTCGAGCATTTCGAGCCGCGCCTGCAACTGGCCGAGGTCGAGGTCGAA
CCTGACCCGGGCAATCCGCAGCGCCTGCGTATCCAGCTCGGTGGCCGCCTGCGCAGCGGGTCGCGCCTGATG
CCTGCGCTATTCGTCATCGAACAGGGCAACGATGGCCTCGAGGTGCGCCATGAGCGATTCGATTGA
Translation:
MSGALPPLFERLSAEADERPAFDDRALAESVRGELLRLLNTRRPAHARSGILAYGLADWTAVQRLRAEDRRQ
LAREVRAAVEHFEPRLQLAEVEVEPDPGNPQRLRIQLGGRLRSGSRLMPALFVIEQGNDGLEVRHERFD*
AnnotationID:4747GeneID:4742
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2368
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9485




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26625




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32913




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4742_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4742
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7113
                           PA2368_tr
                           translation of PA2368
                           141
                           97.16
                           97.87
                           0
                           684.0
     

     
     
187014
                           gb|AAG05756.1|AE004663_2
                           (AE004663) hypothetical protein PA2368 [Pseudomonas aeruginosa PAO1]
                           141
                           97.16
                           97.87
                           0
                           684.0
     

     






      

          
GC ORFID: 47744How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2368Glimmer Score: 

          
Start: 1926843Stop: 1927268

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2368 translation of PA2368Homolog Bit Score 268.0

          
Other Homologs:  t_PA2368 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGGAGCCCTGCCGCCGCTGTTCGAGCGCCTCAGCGCCGAGGCCGACGAACGTCCCGCGTTCGACGAC 
CGGGCGCTGGCCGAGTCGGTCCGCGGCGAGCTGCTGCGCCTGCTCAACACACGGCGCCCGGCGCATGCGCGC 
AGCGGCATCCTCGCCTACGGGCTCGCCGACTGGACCGCCGTGCAACGCCTGCGCGCCGAGGACCGGCGCCAG 
CTGGCACGCGAGGTGCGGGCGGCGGTCGAGCATTTCGAGCCGCGCCTGCAACTGGCCGAGGTCGAGGTCGAA 
CCTGACCCGGGCAATCCGCAGCGCCTGCGTATCCAGCTCGGTGGCCGCCTGCGCAGCGGGTCGCGCCTGATG 
CCTGCGCTATTCGTCATCGAACAGGGCAACGATGGCCTCGAGGTGCGCCATGAGCGATTCGATTGA