ViewGene
Locus Name:
GeneID:
Location:

GeneID:4741
TrivialName: PA14_40160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40160
PAO1 Ortholog Locus:PA1883
Sequence Length:399
Protein Length:132
Start: 3579140
Stop: 3578742
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05272.1|AE004614_6 (AE004614) probable NADH-ubiquinone/plastoquinone oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 132/132 (100%), Positives = 132/132 (100%)
Sequence:
ATGTACGCATCCTTCGCTCCCGCGACCTGGGCCTTGCTCGCCTACCTCTTCGGCGCGCTCGCCCTTTGCCTG
CTCATGCTGGGGTTGGGCCGGGTGCTGGGCGGCCGGTCGCATGGCCGGGCGAAGAACCTGCCGTTCGAGTCG
GGGGTTGATTCCACCGGCTCGTCGCGCTTGCGCTTCTCGGTCAAGTACGCGTTGGTCGCCATGCTGTTCGTG
ATCTTCGGCATCGAGATGCCGTTCCTCTACCTCTGGGCGGTGTCGCTGCGGGAGAATGGCTGGGCGGGTTTC
GTCGAGGCGACGCTGTTCGTCTCCCTGCTGCTGGTCGGACTGTTCTACCTGCACCGGGTCGGCGCCCTCGAC
TGGTCGCCGGAGCGCCGGCGGAAAAAGCCGCACGACTAG
Translation:
MYASFAPATWALLAYLFGALALCLLMLGLGRVLGGRSHGRAKNLPFESGVDSTGSSRLRFSVKYALVAMLFV
IFGIEMPFLYLWAVSLRENGWAGFVEATLFVSLLLVGLFYLHRVGALDWSPERRRKKPHD*
AnnotationID:4746GeneID:4741
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 08:08:32
Gene Name:
Confidence Code:3
GeneProduct:putative NADH-ubiquinone/plastoquinone oxidoreductase
Cell Localization:()
Synonyms:nuoA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative NADH dehydrogenase I, A subunit
Functional Category Confidence Code:5
COGs:COG0838,pfam00507
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN54094.1|AE015546_11 (AE015546) NADH dehydrogenase I, A subunit [Shewanella oneidensis
           MR-1]
          Length = 134

 Score =  165 bits (418), Expect = 4e-41
 Identities = 73/125 (58%), Positives = 97/125 (77%)

>gb|AAF97797.1|AF281148_1 (AF281148) NADH dehydrogenase I subunit A [Pseudomonas fluorescens]
          Length = 137

 Score =  152 bits (384), Expect = 3e-37
 Identities = 70/120 (58%), Positives = 91/120 (75%)

>gb|AAC38640.1| (AF057063) NADH dehydrogenase chain A [Pectobacterium carotovorum
           subsp. carotovorum]
          Length = 146

 Score =  151 bits (382), Expect = 5e-37
 Identities = 70/120 (58%), Positives = 93/120 (77%)






 
Structural Features:
COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) 
[Energy production and conversion]
CD-Length = 123 residues, 100.0% aligned
Score =  123 bits (310), Expect = 8e-30
Identities = 54/123 (43%), Positives = 74/123 (60%)

pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.
CD-Length = 81 residues,  98.8% aligned
Score = 79.0 bits (195), Expect = 2e-16
Identities = 35/80 (43%), Positives = 52/80 (65%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9483




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26623




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37066




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4741_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4741
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7111
                           PA1883_tr
                           translation of PA1883
                           132
                           99.99
                           99.99
                           0
                           685.0
     

     
     
186988
                           gb|AAG05272.1|AE004614_6
                           (AE004614) probable NADH-ubiquinone/plastoquinone oxidoreductase [Pseudomonas aeruginosa PAO1]
                           132
                           99.99
                           99.99
                           0
                           685.0
     

     
     
186989
                           gb|AAN54094.1|AE015546_11
                           (AE015546) NADH dehydrogenase I, A subunit [Shewanella oneidensis MR-1]
                           138
                           54.34
                           71.73
                           10
                           414.0
     

     
     
186992
                           gb|AAN69702.1|AE016606_5
                           (AE016789) NADH dehydrogenase I, A subunit [Pseudomonas putida KT2440]
                           137
                           53.28
                           66.42
                           5
                           375.0
     

     
     
7112
                           PA2637_tr
                           translation of PA2637
                           137
                           51.09
                           67.88
                           5
                           375.0
     

     






      

          
GC ORFID: 47743How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1883Glimmer Score: 

          
Start: 1374770Stop: 1375168

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1883 translation of PA1883Homolog Bit Score 268.0

          
Other Homologs:  t_PA2637 (ORF: BLASTX 152.0), psyr_15may02_Scaffold17_revised_gene2764 (ORF: BLASTX 151.0), t_PA1883 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGCATCCTTCGCTCCCGCGACCTGGGCCTTGCTCGCCTACCTCTTCGGCGCGCTCGCCCTTTGCCTG 
CTCATGCTGGGGTTGGGCCGGGTGCTGGGCGGCCGGTCGCATGGCCGGGCGAAGAACCTGCCGTTCGAGTCG 
GGGGTTGATTCCACCGGCTCGTCGCGCTTGCGCTTCTCGGTCAAGTACGCGTTGGTCGCCATGCTGTTCGTG 
ATCTTCGGCATCGAGATGCCGTTCCTCTACCTCTGGGCGGTGTCGCTGCGGGAGAATGGCTGGGCGGGTTTC 
GTCGAGGCGACGCTGTTCGTCTCCCTGCTGCTGGTCGGACTGTTCTACCTGCACCGGGTCGGCGCCCTCGAC 
TGGTCGCCGGAGCGCCGGCGGAAAAAGCCGCACGACTAG