ViewGene

Locus Name:
GeneID:
Location:

GeneID: 474

TrivialName: PA14_28100

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_28100

PAO1 Ortholog Locus: PA2783

Sequence Length: 1809

Protein Length: 602

Start: 2434523

Stop: 2432715

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06171.1|AE004706_1 (AE004706) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 596/602 (99%), Positives = 597/602 (99%), Gaps = 3/602 (0%)

Sequence:

ATGAAGAAATCCCTGCTCTGCTCCACCCTAGCCCTGGCGGTAGCCTCTGCCGCCCAGGCCGCCCAGGCCGCA
CCGAAGACCGTCGACATCATGGTCCTCTACACCCCCGCGGCGACCCAGACCGCAAATGGCCGCGACATCGAT
GCGCGGATCGCCAGCTACATCGAGTTCGCCAACACCGCCTACGAGAAGAGCGGCGTCAACCTGCGCCTGCGT
CTGGTGCACAAGCAGCGCCTGGACTGGGCCGACTACCCGACGGTGACCGGCACCAACCTCGATCGCTTCATG
CGCGACCCGCAGGTGCAGCGCCTGCGCGAGCAGTACGGCGCCGACCTGGTCAGCCTGGTCAACCGCTCGCAG
AACAGCGGCAACGGCTACATCACCTGCGGCATCGGCTACATGGGCTCGGGCGATAAGAACAGCGGGCGCTTC
CACGGCAACGCCAAGGACATTGCCTACAACCTCACCGGGGTCGACTGCGGGCTCAACACCTTCGCCCATGAA
GCCGGCCACAACATGGGCCTGCGCCACTCCTACGAGCAGGACCTGGAGTCCAGCTACTACGATCCGCGCTAC
GCCCACAGCGGCACCTACGAATGGAGCCGCGGCTACGGCGTGCAGGGGCGCTTCGCCACCGTGATGGCCTAC
CCGCATGCCTTCGGCACCAACAAGCAGGCACCGTTCTTCGCCAACCCGCGCCTGGTCAACGCCGAATGCGCC
AACCAGCCCTGCGGTCGCGAAGAACACGCCGACGCCGTACGCGCGCTGAACAGCATGGCCACGCAGATCGCC
GACTTTCGCCCGACCAAGGTACCCGGCACGCTCAACCCGGGCTCCGGCGGCGACACGCCGACCCCGCCGGAC
CTGCCATGGTGCACGAAAGCCAAGCTCGGCGGCCTGCTCGGCGATGGCGAGTTCGCCAGCATGGAAGGCTGG
CGCGCATGGTCCGGCAACGCCCAGCTGAGCCTGGTGAACGTCGCCAAGGGCTGCCGCGACAATGCCTTGCTG
GTCGACGTGCGTGGCTTCGATCTGCTGGTCCGCCCCATTGCCCCCCTGCGCGCCGGCAGCGGCTACCGGCTG
AGCGGCAAGGTCATGCTCAAGGCCGCCAATACCCGTGAAACCGTGCGCATGGCGCTGCTCAGCGAACGCGCC
GATGGCGCCCTGGCCTACAACCCGGCGCAGAGCGTCGAACTGTCGGTCAGCGGCAACGAGTTCAGTCGCCTG
GAGAAGACCTTCGACTACCGTCCCGCCGCCGACCAGCGCAACCTCTACGTGGCGGTCTGGAGCGACAGCGGC
GCCAGCCTGCTGGTCGACGAGATGAACCTGCAGGAAGCCCAGGCCGCGCCGCCGAGCGTACCGCCGGCGCCG
AAACGCATCGCCTACGACTTCGAGAGCGGCATCGGCGGCTGGAGCGGCGTGCATGCCAGCACCCGCGCCACG
CGCGTCGCCAGCGCCGGGCGGCTGGCCCTGGAAGCCTACCAGCGGCGCTACGCCGGCACCGGCGCCAGCACC
AGCCTGCTGGGCAACCTGGAAGCAGGCCGGACCTACGCGTTCAGCGCGGACGTACGGGTCGGCGACGGTCGC
GGCTCGCAGGCCATGACCTATGCCTACCTCTACCTGGAAAGCCAGGGTCGGCCCGGCGAATACCTGCCCCTG
GGCTACAAGGTGGTCGAGAATGGCCGCTGGGCCAGCCTGCGCGGCCAGGTGCAATTGCCGAAGGGGCCGATC
AAGCGTGCTGAACTGATGATCCTCAGCGGTAACCAGCAGGAGTCGATGTTCATCGACAACGTCCAGTTGCTG
CAGAAGTAG

Translation:

MKKSLLCSTLALAVASAAQAAQAAPKTVDIMVLYTPAATQTANGRDIDARIASYIEFANTAYEKSGVNLRLR
LVHKQRLDWADYPTVTGTNLDRFMRDPQVQRLREQYGADLVSLVNRSQNSGNGYITCGIGYMGSGDKNSGRF
HGNAKDIAYNLTGVDCGLNTFAHEAGHNMGLRHSYEQDLESSYYDPRYAHSGTYEWSRGYGVQGRFATVMAY
PHAFGTNKQAPFFANPRLVNAECANQPCGREEHADAVRALNSMATQIADFRPTKVPGTLNPGSGGDTPTPPD
LPWCTKAKLGGLLGDGEFASMEGWRAWSGNAQLSLVNVAKGCRDNALLVDVRGFDLLVRPIAPLRAGSGYRL
SGKVMLKAANTRETVRMALLSERADGALAYNPAQSVELSVSGNEFSRLEKTFDYRPAADQRNLYVAVWSDSG
ASLLVDEMNLQEAQAAPPSVPPAPKRIAYDFESGIGGWSGVHASTRATRVASAGRLALEAYQRRYAGTGAST
SLLGNLEAGRTYAFSADVRVGDGRGSQAMTYAYLYLESQGRPGEYLPLGYKVVENGRWASLRGQVQLPKGPI
KRAELMILSGNQQESMFIDNVQLLQK*

AnnotationID:483 GeneID:474

AnnotatorUID: diggins

Modification Date/Time: 2005-04-06 02:02:39

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2783

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:951

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18093

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:474

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

821 PA2783_tr translation of PA2783 602 99.00 99.16 3 3101.0

34349 gb|AAG06171.1|AE004706_1 (AE004706) hypothetical protein PA2783 [Pseudomonas aeruginosa PAO1] 602 99.00 99.16 3 3101.0

GC ORFID: `43476`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2783`	Glimmer Score:
Start: `2519403`	Stop: `2521211`
Length: `1809`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA2783 translation of PA2783`	Homolog Bit Score `1197.0`
Other Homologs: `t_PA2783 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAGAAATCCCTGCTCTGCTCCACCCTAGCCCTGGCGGTAGCCTCTGCCGCCCAGGCCGCCCAGGCCGCA CCGAAGACCGTCGACATCATGGTCCTCTACACCCCCGCGGCGACCCAGACCGCAAATGGCCGCGACATCGAT GCGCGGATCGCCAGCTACATCGAGTTCGCCAACACCGCCTACGAGAAGAGCGGCGTCAACCTGCGCCTGCGT CTGGTGCACAAGCAGCGCCTGGACTGGGCCGACTACCCGACGGTGACCGGCACCAACCTCGATCGCTTCATG CGCGACCCGCAGGTGCAGCGCCTGCGCGAGCAGTACGGCGCCGACCTGGTCAGCCTGGTCAACCGCTCGCAG AACAGCGGCAACGGCTACATCACCTGCGGCATCGGCTACATGGGCTCGGGCGATAAGAACAGCGGGCGCTTC CACGGCAACGCCAAGGACATTGCCTACAACCTCACCGGGGTCGACTGCGGGCTCAACACCTTCGCCCATGAA GCCGGCCACAACATGGGCCTGCGCCACTCCTACGAGCAGGACCTGGAGTCCAGCTACTACGATCCGCGCTAC GCCCACAGCGGCACCTACGAATGGAGCCGCGGCTACGGCGTGCAGGGGCGCTTCGCCACCGTGATGGCCTAC CCGCATGCCTTCGGCACCAACAAGCAGGCACCGTTCTTCGCCAACCCGCGCCTGGTCAACGCCGAATGCGCC AACCAGCCCTGCGGTCGCGAAGAACACGCCGACGCCGTACGCGCGCTGAACAGCATGGCCACGCAGATCGCC GACTTTCGCCCGACCAAGGTACCCGGCACGCTCAACCCGGGCTCCGGCGGCGACACGCCGACCCCGCCGGAC CTGCCATGGTGCACGAAAGCCAAGCTCGGCGGCCTGCTCGGCGATGGCGAGTTCGCCAGCATGGAAGGCTGG CGCGCATGGTCCGGCAACGCCCAGCTGAGCCTGGTGAACGTCGCCAAGGGCTGCCGCGACAATGCCTTGCTG GTCGACGTGCGTGGCTTCGATCTGCTGGTCCGCCCCATTGCCCCCCTGCGCGCCGGCAGCGGCTACCGGCTG AGCGGCAAGGTCATGCTCAAGGCCGCCAATACCCGTGAAACCGTGCGCATGGCGCTGCTCAGCGAACGCGCC GATGGCGCCCTGGCCTACAACCCGGCGCAGAGCGTCGAACTGTCGGTCAGCGGCAACGAGTTCAGTCGCCTG GAGAAGACCTTCGACTACCGTCCCGCCGCCGACCAGCGCAACCTCTACGTGGCGGTCTGGAGCGACAGCGGC GCCAGCCTGCTGGTCGACGAGATGAACCTGCAGGAAGCCCAGGCCGCGCCGCCGAGCGTACCGCCGGCGCCG AAACGCATCGCCTACGACTTCGAGAGCGGCATCGGCGGCTGGAGCGGCGTGCATGCCAGCACCCGCGCCACG CGCGTCGCCAGCGCCGGGCGGCTGGCCCTGGAAGCCTACCAGCGGCGCTACGCCGGCACCGGCGCCAGCACC AGCCTGCTGGGCAACCTGGAAGCAGGCCGGACCTACGCGTTCAGCGCGGACGTACGGGTCGGCGACGGTCGC GGCTCGCAGGCCATGACCTATGCCTACCTCTACCTGGAAAGCCAGGGTCGGCCCGGCGAATACCTGCCCCTG GGCTACAAGGTGGTCGAGAATGGCCGCTGGGCCAGCCTGCGCGGCCAGGTGCAATTGCCGAAGGGGCCGATC AAGCGTGCTGAACTGATGATCCTCAGCGGTAACCAGCAGGAGTCGATGTTCATCGACAACGTCCAGTTGCTG CAGAAGTAG