ViewGene
Locus Name:
GeneID:
Location:

GeneID:4739
TrivialName: PA14_17600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17600
PAO1 Ortholog Locus:PA3611
Sequence Length:411
Protein Length:136
Start: 1512849
Stop: 1512439
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06999.1|AE004781_7 (AE004781) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 136/136 (100%), Positives = 136/136 (100%)
Sequence:
ATGTCGCGCTTCATGGCCCTTGCCCTTTGTTTCGTCCTGCCCACCGCCGCCCATGCCGCCTCGCTCAAGGAT
TTCGAACTGAGCAAGATGCTGGAGAAAGTGGCCAAGGAAAGCAGCGTAGGCACTCCCCGCGCCATCAACGAA
GACATCCTCGACCAGGGCTACACCGTCGAAGGCAACCAGTTGATCAATCACCTCAGCGTACGCGCCAGCCAC
GCCGAGCGCATGCGCTCCAACCCGGACAGCGTGCGCAGCCAGCTCGGCGATAGCGTGTGCAGCAACACCGGC
TATCGCCAGTTGCTCGCCCGCGGCGCGATCCTCACCTACAGCTTCACCGAGTACAAGACCAACCAGCCGGTC
GCCACCGAACGCTTCGATGCCGGCAGTTGCCGCATCCAGGGCAAGAAGTAA
Translation:
MSRFMALALCFVLPTAAHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVEGNQLINHLSVRASH
AERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGSCRIQGKK*
AnnotationID:4744GeneID:4739
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 13:01:36
Gene Name:
Confidence Code:3
GeneProduct:putative secreted protein
Cell Localization:()
Synonyms:PA3611
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF64233.1|AF249735_1 (AF249735) putative secreted protein [Pseudomonas putida]
          Length = 139

 Score =  176 bits (446), Expect = 2e-44
 Identities = 84/131 (64%), Positives = 103/131 (78%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9479




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26619




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4739
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7109
                           PA3611_tr
                           translation of PA3611
                           136
                           99.99
                           99.99
                           0
                           688.0
     

     
     
186983
                           gb|AAG06999.1|AE004781_7
                           (AE004781) hypothetical protein PA3611 [Pseudomonas aeruginosa PAO1]
                           136
                           99.99
                           99.99
                           0
                           688.0
     

     
     
186984
                           gb|AAO57487.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           138
                           67.39
                           78.98
                           2
                           475.0
     

     
     
186985
                           gb|AAN67254.1|AE016352_7
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           139
                           63.30
                           76.97
                           3
                           449.0
     

     
     
186986
                           gb|AAF64233.1|AF249735_1
                           (AF249735) putative secreted protein [Pseudomonas putida]
                           139
                           61.87
                           76.97
                           3
                           445.0
     

     






      

          
GC ORFID: 47741How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3611Glimmer Score: 

          
Start: 3441088Stop: 3441498

          
Length: 411


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3611 translation of PA3611Homolog Bit Score 269.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4775 (ORF: BLASTX 184.0), t_PA3611 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCGCTTCATGGCCCTTGCCCTTTGTTTCGTCCTGCCCACCGCCGCCCATGCCGCCTCGCTCAAGGAT 
TTCGAACTGAGCAAGATGCTGGAGAAAGTGGCCAAGGAAAGCAGCGTAGGCACTCCCCGCGCCATCAACGAA 
GACATCCTCGACCAGGGCTACACCGTCGAAGGCAACCAGTTGATCAATCACCTCAGCGTACGCGCCAGCCAC 
GCCGAGCGCATGCGCTCCAACCCGGACAGCGTGCGCAGCCAGCTCGGCGATAGCGTGTGCAGCAACACCGGC 
TATCGCCAGTTGCTCGCCCGCGGCGCGATCCTCACCTACAGCTTCACCGAGTACAAGACCAACCAGCCGGTC 
GCCACCGAACGCTTCGATGCCGGCAGTTGCCGCATCCAGGGCAAGAAGTAA