ViewGene
Locus Name:
GeneID:
Location:

GeneID:4738
TrivialName: PA14_36650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36650
PAO1 Ortholog Locus:PA2159
Sequence Length:417
Protein Length:138
Start: 3264184
Stop: 3264600
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05547.1|AE004642_14 (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 138/138 (100%), Positives = 138/138 (100%)
Sequence:
ATGAAGATCAGCGACATCATGACCCGCAACGTCCAGGTCGCCGACCCGCAGCAGAGCATCCGCGAGGCGGCC
GCCACCATGGCGAGGATCGACAGCGGCGCCCTGCTGGTCGGCGAAGGCGACCGCCTGGTCGGGATGATCACC
GATCGCGACATCGCCATCCGCGCGGTGGCCGGCGGCCTGTCCGGGGATACCCCGCTGGGCCGCATCATGAGC
GGCGACATCCACTATTGCTTCGAAGACGAAGACGTCCAGCACGTGGCCCGCAACATGGCCGACATCCAGATG
CGCCGCCTGCCGGTGCTCAACCGCGAGAAGCGGCTGGTCGGCGTGGTATCCCTGGGCAACATCGCCAGCTGC
CGCGACCAGGCCTCCAGCGCCACCGTCCTGCAGGGCGTCGCCCAGGCCCACTACTGA
Translation:
MKISDIMTRNVQVADPQQSIREAAATMARIDSGALLVGEGDRLVGMITDRDIAIRAVAGGLSGDTPLGRIMS
GDIHYCFEDEDVQHVARNMADIQMRRLPVLNREKRLVGVVSLGNIASCRDQASSATVLQGVAQAHY*
AnnotationID:4743GeneID:4738
AnnotatorUID: diggins
Modification Date/Time: 2004-06-14 13:01:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC49670.1| (AL603646) putative inosine-5'-monophosphate dehydrogenase protein
           [Sinorhizobium meliloti]
          Length = 120

 Score =  110 bits (275), Expect = 1e-24
 Identities = 58/110 (52%), Positives = 78/110 (70%), Gaps = 3/110 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9477




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26617




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32562




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4738_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4738
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7107
                           PA2159_tr
                           translation of PA2159
                           138
                           99.99
                           99.99
                           0
                           687.0
     

     
     
186980
                           gb|AAG05547.1|AE004642_14
                           (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           138
                           99.99
                           99.99
                           0
                           687.0
     

     
     
7108
                           PA2192_tr
                           translation of PA2192
                           138
                           54.34
                           74.63
                           1
                           410.0
     

     
     
186981
                           gb|AAG05580.1|AE004646_1
                           (AE004646) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           138
                           54.34
                           74.63
                           1
                           410.0
     

     
     
186982
                           emb|CAC49670.1|
                           (AL603646) putative inosine-5'-monophosphate dehydrogenase protein [Sinorhizobium meliloti]
                           148
                           39.86
                           54.05
                           38
                           275.0
     

     






      

          
GC ORFID: 47740How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2159Glimmer Score: 

          
Start: 1689730Stop: 1689314

          
Length: 417


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2159 translation of PA2159Homolog Bit Score 269.0

          
Other Homologs:  t_PA2192 (ORF: BLASTX 162.0), t_PA2159 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGATCAGCGACATCATGACCCGCAACGTCCAGGTCGCCGACCCGCAGCAGAGCATCCGCGAGGCGGCC 
GCCACCATGGCGAGGATCGACAGCGGCGCCCTGCTGGTCGGCGAAGGCGACCGCCTGGTCGGGATGATCACC 
GATCGCGACATCGCCATCCGCGCGGTGGCCGGCGGCCTGTCCGGGGATACCCCGCTGGGCCGCATCATGAGC 
GGCGACATCCACTATTGCTTCGAAGACGAAGACGTCCAGCACGTGGCCCGCAACATGGCCGACATCCAGATG 
CGCCGCCTGCCGGTGCTCAACCGCGAGAAGCGGCTGGTCGGCGTGGTATCCCTGGGCAACATCGCCAGCTGC 
CGCGACCAGGCCTCCAGCGCCACCGTCCTGCAGGGCGTCGCCCAGGCCCACTACTGA