ViewGene

Locus Name:
GeneID:
Location:

GeneID:4737
TrivialName: PA14_43770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43770
PAO1 Ortholog Locus:PA1603
Sequence Length:423
Protein Length:140
Start: 3896854
Stop: 3897276
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04992.1|AE004588_5 (AE004588) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 138/139 (99%), Positives = 138/139 (99%)
Sequence:
ATGTCCCGTACCACCCCGTACCGCCTCGACGACCAGATCGGCTTCATCCTGCGCCAGGCCAACCAGCGCTAT
GCAGCGTTGTTCGCCAATGGCATCGGCAACGGCCTGACACCCACCCAGTGGGCCGCCCTGGTCCGCCTCGGC
GAGACCGGACCCTGCCCGCAGAACCAGCTCGGCCGGCTCACCGCCATGGACGCCGCGACCATCAAGGGCGTC
GTCGAGCGCCTGGACAAACGGGGACTGATCCAGCGCAGCGCCGATCCGGACGACGGCCGGCGCCTGCTGGTC
AGCCTCAGTCCTGCCGGACGCGCCGAACTCGAGGCCGGCCTGGCGGCCGCCCGCGAGATCAACCGGCAGGCC
TTGGCTCCCCTCTCCCCGCAAGAACAGGAAACCCTGCGCGGGTTGCTCGCTCGCCTGACCTGA
Translation:
MSRTTPYRLDDQIGFILRQANQRYAALFANGIGNGLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGV
VERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQALAPLSPQEQETLRGLLARLT*
AnnotationID:4742GeneID:4737
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 17:05:31
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1603
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01047,smart00347,COG1846
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC49094.1| (AP005949) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 151

 Score =  159 bits (403), Expect = 2e-39
 Identities = 81/134 (60%), Positives = 100/134 (74%)

>dbj|BAB51433.1| (AP003005) transcriptional regulator [Mesorhizobium loti]
          Length = 153

 Score =  129 bits (323), Expect = 4e-30
 Identities = 71/133 (53%), Positives = 94/133 (70%), Gaps = 1/133 (0%)

>gb|AAN69540.1|AE016587_6 (AE016788) transcriptional regulator, MarR family [Pseudomonas
           putida KT2440]
          Length = 158

 Score = 95.1 bits (235), Expect = 6e-20
 Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Structural Features:
pfam01047, MarR, MarR family.
CD-Length = 104 residues, 100.0% aligned
Score = 87.2 bits (216), Expect = 6e-19
Identities = 44/104 (42%), Positives = 63/104 (60%)

smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
CD-Length = 101 residues,  94.1% aligned
Score = 76.8 bits (189), Expect = 9e-16
Identities = 38/95 (40%), Positives = 57/95 (60%)

COG1846, MarR, Transcriptional regulators [Transcription]
CD-Length = 126 residues,  84.1% aligned
Score = 72.7 bits (177), Expect = 2e-14
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Genomic Context:
Comment:
ReferenceID:9475
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26615
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37217
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4737_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4737

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7106 PA1603_tr translation of PA1603 140 98.57 98.57 0 686.0
186977 gb|AAG04992.1|AE004588_5 (AE004588) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 140 98.57 98.57 0 686.0
186978 dbj|BAC49094.1| (AP005949) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] 151 54.96 68.87 11 399.0
186979 dbj|BAB51433.1| (AP003005) transcriptional regulator [Mesorhizobium loti] 154 46.10 61.03 15 319.0
GC ORFID: 47739How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1603Glimmer Score:
Start: 1057055Stop: 1056633
Length: 423
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1603 translation of PA1603Homolog Bit Score 269.0
Other Homologs: t_PA1603 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCGTACCACCCCGTACCGCCTCGACGACCAGATCGGCTTCATCCTGCGCCAGGCCAACCAGCGCTAT
GCAGCGTTGTTCGCCAATGGCATCGGCAACGGCCTGACACCCACCCAGTGGGCCGCCCTGGTCCGCCTCGGC
GAGACCGGACCCTGCCCGCAGAACCAGCTCGGCCGGCTCACCGCCATGGACGCCGCGACCATCAAGGGCGTC
GTCGAGCGCCTGGACAAACGGGGACTGATCCAGCGCAGCGCCGATCCGGACGACGGCCGGCGCCTGCTGGTC
AGCCTCAGTCCTGCCGGACGCGCCGAACTCGAGGCCGGCCTGGCGGCCGCCCGCGAGATCAACCGGCAGGCC
TTGGCTCCCCTCTCCCCGCAAGAACAGGAAACCCTGCGCGGGTTGCTCGCTCGCCTGACCTGA