ViewGene
Locus Name:
GeneID:
Location:

GeneID:4736
TrivialName: PA14_51510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51510
PAO1 Ortholog Locus:PA0988
Sequence Length:405
Protein Length:134
Start: 4580154
Stop: 4579750
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82961.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 134/134 (100%), Positives = 134/134 (100%)
Sequence:
ATGCCGACCCCGGTTTTCATAAAAAGAACGGTACTGTTTGGCGACTGTGATCCCGAAGGGATCGTCTATACG
CCACGTTTTTCATACTTCGTGCTGGAAGCGGTGCAGGAGGCGCTCGGGGTCTGGCTGGGAGGGCCGGGGCTC
AGAACCCTCCTGGGTTTCAGGATTCTTCCCCCGGCGAGAGCGTTCTCCCTGGAATTCCTGCATCCGGTCACC
TGGGACGACGAACTCACGCTGCGAGTGGGTGTGTCGAACGTGGGGACGCATTCTTTCTCGTTTTCAGTCGAA
GGACGTCTTTCGCCGGACGTGGTGGCGTTCACTGCGAGCCTGACGCAGGTCTGTGTCTCCCCGGATACCCGC
GAAGTCATGGAGGTCCCCGCGCAGCTCCGCGCGCTCCTCGCATAG
Translation:
MPTPVFIKRTVLFGDCDPEGIVYTPRFSYFVLEAVQEALGVWLGGPGLRTLLGFRILPPARAFSLEFLHPVT
WDDELTLRVGVSNVGTHSFSFSVEGRLSPDVVAFTASLTQVCVSPDTREVMEVPAQLRALLA*
AnnotationID:4741GeneID:4736
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 15:03:38
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0988
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0824, FcbC, Predicted thioesterase [General function prediction only].
      CD-Length = 137 residues,  95.6% aligned
      Score = 91.9 bits (228), Expect = 3e-20






   
Genomic Context:






   
Comment:


















    ReferenceID:9473




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26613




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4736
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
186975
                           gb|AAP82961.1|
                           (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
                           134
                           99.99
                           99.99
                           0
                           694.0
     

     
     
7105
                           PA0988_tr
                           translation of PA0988
                           134
                           98.50
                           99.99
                           0
                           688.0
     

     
     
186976
                           gb|AAG04377.1|AE004532_1
                           (AE004532) hypothetical protein PA0988 [Pseudomonas aeruginosa PAO1]
                           134
                           98.50
                           99.99
                           0
                           688.0
     

     






      

          
GC ORFID: 47738How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0988Glimmer Score: 

          
Start: 373753Stop: 374157

          
Length: 405


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0988 translation of PA0988Homolog Bit Score 269.0

          
Other Homologs:  t_PA0988 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGACCCCGGTTTTCATAAAAAGAACGGTACTGTTTGGCGACTGTGATCCCGAAGGGATCGTCTATACG 
CCACGTTTTTCATACTTCGTGCTGGAAGCGGTGCAGGAGGCGCTCGGGGTCTGGCTGGGAGGGCCGGGGCTC 
AGAACCCTCCTGGGTTTCAGGATTCTTCCCCCGGCGAGAGCGTTCTCCCTGGAATTCCTGCATCCGGTCACC 
TGGGACGACGAACTCACGCTGCGAGTGGGTGTGTCGAACGTGGGGACGCATTCTTTCTCGTTTTCAGTCGAA 
GGACGTCTTTCGCCGGACGTGGTGGCGTTCACTGCGAGCCTGACGCAGGTCTGTGTCTCCCCGGATACCCGC 
GAAGTCATGGAGGTCCCCGCGCAGCTCCGCGCGCTCCTCGCATAG