ViewGene
Locus Name:
GeneID:
Location:

GeneID:4733
TrivialName: PA14_73020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73020
PAO1 Ortholog Locus:PA5536
Sequence Length:405
Protein Length:134
Start: 6503107
Stop: 6502703
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08921.1|AE004966_3 (AE004966) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/134 (100%), Positives = 134/134 (100%)
Sequence:
ATGACCGAACAGGAACTGCTTGCCCAGCCCGACGCTGCCTACATGGACGAAGCCCAGCAGGACTTCTTCCGC
GACCTGCTGCTGCGTCAGCGCCAGGAACTTCAGGCGCGCATCGAAGGCGAATTCGGCGAGCTGCGCGATCTC
GAACGCCCCAGCGACGAGGCCGACCTGGCTTCCCGCGAGGAACAGCGGCAATGGCAACTTCGCCTGCTGGAG
CGGGAGAAGAAGCTGCTCGACAAGATCGACGAAGCGCTGGAGCGCCTGGCCCGCGGCGACTACGGCTGGTGC
CAGGAAACCGGCGAGCCGATCGGCCTGCGCCGCCTGCTGTTGCGTCCCACCGCCACCCTCTGCATCGAGGCG
AAAGAGCGCCAGGAGAAGCGCGAACGCCACGTGCGGCACAACTGA
Translation:
MTEQELLAQPDAAYMDEAQQDFFRDLLLRQRQELQARIEGEFGELRDLERPSDEADLASREEQRQWQLRLLE
REKKLLDKIDEALERLARGDYGWCQETGEPIGLRRLLLRPTATLCIEAKERQEKRERHVRHN*
AnnotationID:4738GeneID:4733
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative C4-type zinc finger protein, DksA/TraR family
Cell Localization:()
Synonyms:PA5536
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative dnaK suppressor protein
Functional Category Confidence Code:5
COGs:COG1734
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56962.1| (AE016868) dnaK suppressor protein, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 134

 Score =  124 bits (311), Expect = 9e-29
 Identities = 58/132 (43%), Positives = 90/132 (68%)

>emb|CAE30680.1| (BX640437) putative dnaK suppressor protein [Bordetella
           bronchiseptica]
          Length = 154

 Score =  124 bits (310), Expect = 1e-28
 Identities = 61/128 (47%), Positives = 89/128 (69%)

>gb|AAN67833.1|AE016414_8 (AE016782) C4-type zinc finger protein, DksA/TraR family
           [Pseudomonas putida KT2440]
          Length = 134

 Score =  122 bits (306), Expect = 3e-28
 Identities = 59/132 (44%), Positives = 88/132 (66%)








 
Structural Features:
COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]
CD-Length = 120 residues, 100.0% aligned
Score = 83.9 bits (207), Expect = 6e-18
Identities = 54/120 (45%), Positives = 78/120 (65%), Gaps = 1/120 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26607




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33318




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4733_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4733
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7103
                           PA5536_tr
                           translation of PA5536
                           134
                           99.99
                           99.99
                           0
                           689.0
     

     
     
186956
                           gb|AAG08921.1|AE004966_3
                           (AE004966) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           134
                           99.99
                           99.99
                           0
                           689.0
     

     
     
186958
                           gb|AAR07796.1|
                           (AY378100) hypothetical protein LV190 [Klebsiella pneumoniae]
                           140
                           47.14
                           63.57
                           6
                           305.0
     

     
     
186962
                           gb|AAN67833.1|AE016414_8
                           (AE016782) C4-type zinc finger protein, DksA/TraR family [Pseudomonas putida KT2440]
                           134
                           44.02
                           65.67
                           0
                           303.0
     

     
     
186957
                           gb|AAO56962.1|
                           (AE016868) dnaK suppressor protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           134
                           43.28
                           67.16
                           0
                           309.0
     

     






      

          
GC ORFID: 47735How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5536Glimmer Score: 

          
Start: 5766796Stop: 5766392

          
Length: 405


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5536 translation of PA5536Homolog Bit Score 270.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene180 (ORF: BLASTX 122.0), t_PA5536 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAACAGGAACTGCTTGCCCAGCCCGACGCTGCCTACATGGACGAAGCCCAGCAGGACTTCTTCCGC 
GACCTGCTGCTGCGTCAGCGCCAGGAACTTCAGGCGCGCATCGAAGGCGAATTCGGCGAGCTGCGCGATCTC 
GAACGCCCCAGCGACGAGGCCGACCTGGCTTCCCGCGAGGAACAGCGGCAATGGCAACTTCGCCTGCTGGAG 
CGGGAGAAGAAGCTGCTCGACAAGATCGACGAAGCGCTGGAGCGCCTGGCCCGCGGCGACTACGGCTGGTGC 
CAGGAAACCGGCGAGCCGATCGGCCTGCGCCGCCTGCTGTTGCGTCCCACCGCCACCCTCTGCATCGAGGCG 
AAAGAGCGCCAGGAGAAGCGCGAACGCCACGTGCGGCACAACTGA