ViewGene
Locus Name:
GeneID:
Location:

GeneID:4732
TrivialName: PA14_12620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12620
PAO1 Ortholog Locus:PA3962
Sequence Length:417
Protein Length:138
Start: 1082552
Stop: 1082136
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07349.1|AE004814_4 (AE004814) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 138/138 (100%), Positives = 138/138 (100%)
Sequence:
ATGCGCCTTGCCACCCGCGTTTCCTGTGCCGTTCTCAGTGCAGCCCTGCTGAGCCAGTTGTCGGCCTGCGGT
ACGCTGTTCTACCCCGAGCGACGCGGCCAGATCGACGGCCGCATCGATCCGGCCATCGTCGCCTTCGACGCC
ATCGGCCTGCTGTTCTATATCATCCCCGGCCTGATCGCCTTCGGCGTCGACTTCGCCACCGGCGCCATCTAC
CTGCCCGACGCCAAGTACTCGGTCGCCCCGGAAGTGCTCAAGGATGCCGTCGGCGCGGACGGCAAGGTCGAC
AACCGCAAGCTCAAGGCCATCCTCGAACGCGAGATCGGCCGTGAACTGCCGCTCGACGACCCGCGCCTCATC
CGCCACAGCGGCAGCGTCGAGCAACTGGCGGCCTATGGCCTGAAGCCGGCCGCCTGA
Translation:
MRLATRVSCAVLSAALLSQLSACGTLFYPERRGQIDGRIDPAIVAFDAIGLLFYIIPGLIAFGVDFATGAIY
LPDAKYSVAPEVLKDAVGADGKVDNRKLKAILEREIGRELPLDDPRLIRHSGSVEQLAAYGLKPAA*
AnnotationID:4737GeneID:4732
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 18:06:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3962
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9465




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26605




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4732
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7102
                           PA3962_tr
                           translation of PA3962
                           138
                           99.99
                           99.99
                           0
                           690.0
     

     
     
186953
                           gb|AAG07349.1|AE004814_4
                           (AE004814) hypothetical protein PA3962 [Pseudomonas aeruginosa PAO1]
                           138
                           99.99
                           99.99
                           0
                           690.0
     

     
     
186955
                           gb|AAO58219.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           139
                           63.30
                           78.41
                           1
                           447.0
     

     
     
186954
                           gb|AAN70343.1|AE016676_3
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           160
                           56.87
                           70.62
                           22
                           470.0
     

     






      

          
GC ORFID: 47734How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3962Glimmer Score: 

          
Start: 3871386Stop: 3871802

          
Length: 417


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3962 translation of PA3962Homolog Bit Score 270.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5716 (ORF: BLASTX 178.0), t_PA3962 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTTGCCACCCGCGTTTCCTGTGCCGTTCTCAGTGCAGCCCTGCTGAGCCAGTTGTCGGCCTGCGGT 
ACGCTGTTCTACCCCGAGCGACGCGGCCAGATCGACGGCCGCATCGATCCGGCCATCGTCGCCTTCGACGCC 
ATCGGCCTGCTGTTCTATATCATCCCCGGCCTGATCGCCTTCGGCGTCGACTTCGCCACCGGCGCCATCTAC 
CTGCCCGACGCCAAGTACTCGGTCGCCCCGGAAGTGCTCAAGGATGCCGTCGGCGCGGACGGCAAGGTCGAC 
AACCGCAAGCTCAAGGCCATCCTCGAACGCGAGATCGGCCGTGAACTGCCGCTCGACGACCCGCGCCTCATC 
CGCCACAGCGGCAGCGTCGAGCAACTGGCGGCCTATGGCCTGAAGCCGGCCGCCTGA