ViewGene

Locus Name:
GeneID:
Location:

GeneID:4731
TrivialName: PA14_31310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31310
PAO1 Ortholog Locus:PA2568
Sequence Length:408
Protein Length:135
Start: 2722963
Stop: 2723370
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05956.1|AE004685_2 (AE004685) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/135 (98%), Positives = 134/135 (99%)
Sequence:
ATGGAGCACCCATACAAGACCCCAGAGGCGGACCTGGCCGACGAGAGGCTGACTGCGGGAGGTTTCCTTTCC
GGTGGGCAGCCGCTGTGGAAGGCATTCTGGCTGTTCTTCGCTGCGGGTTTCTTATTGCTCAGTGTCGCCGCC
AGGCAGGCGATGGTGGCCATTGTCGATCCGCTGATGCAGGAAGCTCCCGGCGAACATGCGGTGGCCCTGACC
TTGTGGGGAATGATCGGTGTCGAGCTGGTGAGGCTGGCCTACCTGTGCCTCAGCCTCGTCGTGGTCTGGCGC
TGCGGGCGCAACTCCCGCTGGGTGGCTGCGCGCCATGCCAGCAGGGCGGTGCTGTCGGCACTGATACTCCTG
ACCCTTTACTCGATCTATCTGGTCTGGGCCTTGCTCGCCAGTCCCTGA
Translation:
MEHPYKTPEADLADERLTAGGFLSGGQPLWKAFWLFFAAGFLLLSVAARQAMVAIVDPLMQEAPGEHAVALT
LWGMIGVELVRLAYLCLSLVVVWRCGRNSRWVAARHASRAVLSALILLTLYSIYLVWALLASP*
AnnotationID:4736GeneID:4731
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:43
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2568
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.

Genomic Context:
Comment:
ReferenceID:9463
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26603
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4731

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7101 PA2568_tr translation of PA2568 135 98.51 99.25 0 690.0
186952 gb|AAG05956.1|AE004685_2 (AE004685) hypothetical protein PA2568 [Pseudomonas aeruginosa PAO1] 135 98.51 99.25 0 690.0
GC ORFID: 47733How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2568Glimmer Score:
Start: 2230963Stop: 2230556
Length: 408
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2568 translation of PA2568Homolog Bit Score 270.0
Other Homologs: t_PA2568 (ORF: GLIMMER)
GC ORF Sequence
ATGGAGCACCCATACAAGACCCCAGAGGCGGACCTGGCCGACGAGAGGCTGACTGCGGGAGGTTTCCTTTCC
GGTGGGCAGCCGCTGTGGAAGGCATTCTGGCTGTTCTTCGCTGCGGGTTTCTTATTGCTCAGTGTCGCCGCC
AGGCAGGCGATGGTGGCCATTGTCGATCCGCTGATGCAGGAAGCTCCCGGCGAACATGCGGTGGCCCTGACC
TTGTGGGGAATGATCGGTGTCGAGCTGGTGAGGCTGGCCTACCTGTGCCTCAGCCTCGTCGTGGTCTGGCGC
TGCGGGCGCAACTCCCGCTGGGTGGCTGCGCGCCATGCCAGCAGGGCGGTGCTGTCGGCACTGATACTCCTG
ACCCTTTACTCGATCTATCTGGTCTGGGCCTTGCTCGCCAGTCCCTGA